Publications: Stony Brook X-ray Group and NSLS X-1A Beamline

We have below a list of publications from the Stony Brook X-ray Optics group, and also from other groups using the NSLS X1A beamline, starting from 1992 until now. Please send any corrections or additions to Chris.Jacobsen@stonybrook.edu.

• First Author Refereed Journal Publications
• Collaborated Refereed Journal Publications
• Conference Proceedings / Other Publications
• Dissertations
• Master's Theses
• Publications from other groups using the X-1A Beamlines

For more recent publications please visit the NSLS publication search or go directly for beamline X1A1 or X1A2

First Author Refereed Journal Publications

2009

1. X. Huang, H. Miao, J. Steinbrener, J. Nelson, D. Shapiro, A. Stewart, J. Turner and C. Jacobsen, "Signal-to-noise and radiation exposure considerations in conventional and diffraction x-ray microscopy", Optics Express 17 (16), 13541-13553, (Jul 2009). [ doi:10.1364/OE.17.013541] [ PDF]

2. X. Huang, J. Nelson, J. Kirz, E. Lima, S. Marchesini, H. Miao, A.M. Neiman, D. Shapiro, J. Steinbrener, A. Stewart, J.J. Turner and C. Jacobsen, "Soft X-ray Diffraction Microscopy of a Frozen Hydrated Yeast Cell", Physical Review Letters 103 (19), (Nov 2009). [ doi:10.1103/PhysRevLett.103.198101] [ PDF]



2008

3. B. Hornberger, M. D. de Jonge, M. Feser, P. Holl, C. Holzner, C. Jacobsen, D. Legnini, D. Paterson, P. Rehak, L. Strüder and S. Vogt, "Differential Phase Contrast with a Segmented Detector in a Scanning X-Ray Microprobe", Journal of Synchrotron Radiation 15 (4), 355-362, (Jul 2008). [ doi:10.1107/S0909049508008509] [ PDF]



2007

4. B. Hornberger, M. Feser and C. Jacobsen, "Quantitative amplitude and phase contrast imaging in a scanning transmission X-ray microscope", Ultramicroscopy 107, 644-655, (2007). [ doi:10.1016/j.ultramic.2006.12.006] [ PDF]



2006

5. M. Feser, B. Hornberger, C. Jacobsen, G. De Geronimo, P. Rehak, P. Holl and L. Strüder, "Integrating Silicon detector with segmentation for scanning transmission X-ray microscopy", Nuclear Instruments and Methods in Physics Research A 565, 841-854, (2006). [ PDF]

6. M. Lu, D.M. Tennant and C.J. Jacobsen, "Orientation dependence of linewidth variation in sub-50-nm Gaussian e-beam lithography and its correction", Journal of Vacuum Science and Technology B 24 (6), 2881-2885, (2006). [ PDF]



2005

7. M. Lerotic, C. Jacobsen, J.B. Gillow, A.J. Francis, S. Wirick, S. Vogt and J. Maser, "Cluster analysis in soft X-ray spectromicroscopy: finding the patterns in complex specimens", Journal of Electron Spectroscopy and Related Phenomena 144--147, 1137-1143, (2005). [ PDF]

8. T. Beetz, M.R. Howells, C. Jacobsen, C.-C. Kao, J. Kirz, E. Lima, T.O. Mentes, H. Miao, C. Sanchez-Hanke, D. Sayre and D. Shapiro, "Apparatus for x-ray diffraction microscopy and tomography of cryo specimens", Nuclear Instruments and Methods in Physics Research A 545 (1-2), 459-468, (2005). [ PDF]

9. D. Shapiro, P. Thibault, T. Beetz, V. Elser, M. Howells, C. Jacobsen, J. Kirz, E. Lima, H. Miao, A. M. Neiman and D. Sayre, "Biological imaging by soft x-ray diffraction microscopy", Proceedings of the National Academy of Science 102 (43), 15343-15346, (2005). [ PDF]



2004

10. M. Lerotic, C. Jacobsen, T. Schäfer and S. Vogt, "Cluster analysis of soft x-ray spectromicroscopy data", Ultramicroscopy 100 (1--2), 35-57, (2004). [ doi:10.1016/j.ultramic.2004.01.008] [ PDF]



2003

11. T. Beetz and C. Jacobsen, "Soft x-ray radiation-damage studies in PMMA using a cryo-STXM", Journal of Synchrotron Radiation 10 (3), 280-283, (2003). [ PDF]

12. A. Stein, C. Jacobsen, K. Evans-Lutterodt, D.M. Tennant, G. Bogart, F. Klemens, L.E. Ocola, B.J. Choi and S.V. Sreenivasan, "Diffractive x-ray optics using production fabrication methods", Journal of Vacuum Science and Technology B 21 (1), 214-219, (2003). [ PDF]



2002

13. K. Kaznacheyev, A. Osanna, C. Jacobsen, O. Plashkevych, O. Vahtras, H. Ågren, V. Carravetta and A. Hitchcock, "Innershell absorption spectroscopy of amino acids", Journal of Physical Chemistry A 106 (13), 3153-3168, (2002). [ PDF]



2001

14. S. Vogt, H. N. Chapman, C. Jacobsen and R. Medenwaldt, "Dark field x-ray microscopy: the effects of condenser/detector aperture", Ultramicroscopy 87, 25-44, (2001). [ PDF]



2000

15. J. Miao, J. Kirz and D. Sayre, "The oversampling phasing method", Acta Crystallographica D: Biological Crystallography 56, 1312-1315, (2000). [ PDF]

16. B. Winn, H. Ade, C. Buckley, M. Feser, M. Howells, S. Hulbert, C. Jacobsen, K. Kaznacheyev, J. Kirz, A. Osanna, J. Maser, I. McNulty, J. Miao, T. Oversluizen, S. Spector, B. Sullivan, S. Wang, S. Wirick and H. Zhang, "Illumination for coherent soft x-ray applications: the new X1A beamline at the NSLS", Journal of Synchrotron Radiation 7, 395-404, (2000). [ PDF]

17. C. Jacobsen, G. Flynn, S. Wirick and C. Zimba, "Soft x-ray spectroscopy from image sequences with sub-100 nm spatial resolution", Journal of Microscopy 197 (2), 173-184, (2000). [ PDF]

18. J. Maser, A. Osanna, Y. Wang, C. Jacobsen, J. Kirz, S. Spector, B. Winn and D. Tennant, "Soft x-ray microscopy with a cryo STXM: I. Instrumentation, imaging, and spectroscopy", Journal of Microscopy 197 (1), 68-79, (2000). [ PDF]

19. U. Neuhäusler, C. Jacobsen, D. Schulze, D. Stott and S. Abend, "A specimen chamber for soft x-ray spectromicroscopy on aqueous and liquid samples", Journal of Synchrotron Radiation 7, 110-112, (2000). [ PDF]

20. Y. Wang, C. Jacobsen, J. Maser and A. Osanna, "Soft x-ray microscopy with a cryo STXM: II. Tomography", Journal of Microscopy 197 (1), 80-93, (2000). [ PDF]



1999

21. H. N. Chapman, S. Vogt, C. Jacobsen, J. Kirz, J. Miao, Y. Wang, B. Winn and T. Oversluizen, "A shutter-photodiode combination for UV and soft x-ray beamlines", Journal of Synchrotron Radiation 6, 50, (1999). [ PDF]

22. J. Miao, P. Charalambous, J. Kirz and D. Sayre, "An extension of the methods of x-ray crystallography to allow imaging of micron-size non-crystalline specimens", Nature 400, 342-344, (1999). [ PDF]

23. U. Neuhäusler, S. Abend, G. Lagaly and C. Jacobsen, "Soft x-ray spectromicroscopy on solid stabilized emulsions", Colloid and Polymer Science 277, 719-726, (1999). [ PDF]



1998

24. C. Jacobsen and J. Kirz, "X-ray microscopy with synchrotron radiation", Nature Structural Biology 5 (supplement), 650-653, (1998). [ PDF]

25. D. Sayre, H. N. Chapman and J. Miao, "On the extendibility of x-ray crystallography to noncrystals", Acta Crystallographica A 54, 232-239, (1998). [ PDF]

26. J. Miao, D. Sayre and H. N. Chapman, "Phase retrieval from the magnitude of the Fourier transforms of non-periodic objects", Journal of the Optical Society of America A 15 (6), 1662-1669, (1998). [ PDF]

27. Y. Wang and C. Jacobsen, "A numerical study of resolution and contrast in soft x-ray contact microscopy", Journal of Microscopy 191 (2), 159-169, (1998). [ PDF]



1997

28. J. Boese, A. Osanna, C. Jacobsen and J. Kirz, "Carbon edge XANES spectroscopy of amino acids and peptides", Journal of Electron Spectroscopy and Related Phenomena 85, 9-15, (1997). [ PDF]

29. H.N. Chapman, "Phase-retrieval x-ray microscopy by Wigner-distribution deconvolution: signal processing", Scanning Microscopy 11, 67-80, (1997). [ PDF]

30. S. Spector, C. Jacobsen and D. Tennant, "Process optimization for production of sub-20 nm soft x-ray zone plates", Journal of Vacuum Science and Technology B 15 (6), 2872-2876, (1997). [ PDF]



1996

31. H. N. Chapman, "Phase-retrieval x-ray microscopy by Wigner-distribution deconvolution", Ultramicroscopy 66, 153-172, (1996). [ PDF]

32. C. Jacobsen, H. N. Chapman, J. Fu, A. Kalinovsky, J. Kirz, J. Maser, A. Osanna, S. Spector, D. Tennant, S. Wang, S. Wirick and X. Zhang, "Biological Microscopy and Soft X-ray Optics at Stony Brook", Journal of Electron Spectroscopy and Related Phenomena 80, 337-341, (1996). [ PDF]

33. X. Zhang, R. Balhorn, J. Mazrimas and J. Kirz, "Mapping and measuring DNA to protein ratios in mammalian sperm head by XANES imaging", Journal of Structural Biology 116, 335-344, (1996). [ PDF]

34. H. N. Chapman, J. Fu, C. Jacobsen and S. Williams, "Dark-field x-ray microscopy of immunogold-labeled cells", Journal of the Microscopy Society of America 2 (2), 53-62, (1996). [ PDF]

35. B. Winn, H. Ade, C. Buckley, M. Howells, S. Hulbert, C. Jacobsen, J. Kirz, I. McNulty, J. Miao, T. Oversluizen, I. Pogorelsky and S. Wirick, "X1A: second generation undulator beamlines serving soft x-ray spectromicroscopy experiments at the NSLS", Review of Scientific Instruments 67 (9), 1-4, (1996), Paper A31. [ PDF]



1995

36. D. Sayre and H. N. Chapman, "X-Ray Microscopy", Acta Crystallographica A 51, 237-252, (1995). [ PDF]

37. S. Williams, C. Jacobsen, J. Kirz, J. Maser, S. Wirick, X. Zhang, H. Ade and M. Rivers, "Instrumentation developments in scanning soft x-ray microscopy at the NSLS", Review of Scientific Instruments 66 (2), 1271-1275, (1995). [ PDF]

38. J. Kirz, C. Jacobsen and M. Howells, "Soft x-ray microscopes and their biological applications", Quarterly Reviews of Biophysics 28 (1), 33-130, (1995), Also available as Lawrence Berkeley Laboratory report LBL-36371. [ PDF]

39. X. Zhang, C. Jacobsen, S. Lindaas and S. Williams, "Exposure strategies for PMMA from in situ XANES spectroscopy", Journal of Vacuum Science and Technology B 13 (4), 1477-1483, (1995). [ PDF]



1994

40. J. Kirz, H. Ade, E. Anderson, C. Buckley, H. Chapman, M. Howells, C. Jacobsen, C.-H. Ko, S. Lindaas, D. Sayre, S. Williams, S. Wirick and X. Zhang, "New results in soft X-ray microscopy", Nuclear Instruments and Methods in Physics Research B 87, 92-97, (1994).

41. X. Zhang, H. Ade, C. Jacobsen, J. Kirz, S. Lindaas, S. Williams and S. Wirick, "Micro-XANES: Chemical Contrast in the Scanning Transmission x-ray Microscope", Nuclear Instruments and Methods in Physics Research A 347, 431-435, (1994). [ PDF]



1993

42. C. Jacobsen, S. Lindaas, S. Williams and X. Zhang, "Scanning luminescence x-ray microscopy: imaging fluorescence dyes at suboptical resolution", Journal of Microscopy 172, 121-129, (1993). [ PDF]

43. S. Williams, X. Zhang, C. Jacobsen, J. Kirz, S. Lindaas, J. van't Hof and S. S. Lamm, "Measurements of Wet Metaphase Chromosomes in the Scanning Transmission X-ray Microscope", Journal of Microscopy 170, 155-165, (1993). [ PDF]



1992

44. H. Ade, C.-H. Ko and E. Anderson, "Astigmatism correction in x-ray scanning photoemission microscope with use of elliptical zone plate", Applied Physics Letters 60, 1040-1042, (1992). [ PDF]

45. H. Ade, C.-H. Ko, E. Johnson and E. Anderson, "Improved images with the scanning photoelectron microscope at the National Synchrotron Light Source", Surface Interface Analysis 19, 17-22, (1992). [ doi:10.1002/sia.740190107]

46. H. Ade, X. Zhang, S. Cameron, C. Costello, J. Kirz and S. Williams, "Chemical Contrast in X-ray Microscopy and Spatially Resolved XANES Spectroscopy of Organic Specimens", Science 258, 972-975, (1992). [ PDF]

47. C. Jacobsen, J. Kirz and S. Williams, "Resolution in soft x-ray microscopes", Ultramicroscopy 47, 55-79, (1992). [ PDF]

48. J. Kirz, H. Ade, C. Jacobsen, C.-H. Ko, S. Lindaas, I. McNulty, D. Sayre, S. Williams, X. Zhang and M. Howells, "Soft x-ray microscopy with coherent x-rays", Review of Scientific Instruments 63, 557-563, (1992). [ PDF]

49. I. McNulty, J. Kirz, C. Jacobsen, E. Anderson, D. Kern and M. Howells, "High-resolution imaging by Fourier transform x-ray holography", Science 256, 1009-1012, (1992). [ PDF]

50. C. Jacobsen and M. R. Howells, "A technique for projection x-ray lithography using computer generated holograms", Journal of Applied Physics 71 (6), 2993-3001, (1992). [ PDF]

51. C. Jacobsen and M. Howells, "Projection x-ray lithography using computer-generated holograms: A study of compatibility with proximity lithography", Journal of Vacuum Science and Technology B 10 (6), 3177-3181, (1992). [ PDF]



1991

52. H. Ade, J. Kirz, S. Hulbert, E. Johnson, E. Anderson and D. Kern, "Images of a microelectronic device with the X1-SPEM, a first generation scanning photoemission microscope at the National Synchrotron Light Source", Journal of Vacuum Science and Technology A 9, 1902-1906, (1991). [ PDF]

53. C. Jacobsen, S. Williams, E. Anderson, M. T. Browne, C. J. Buckley, D. Kern, J. Kirz, M. Rivers and X. Zhang, "Diffraction-limited imaging in a scanning transmission x-ray microscope", Optics Communications 86, 351-364, (1991). [ PDF]



1990

54. I. McNulty, J. Kirz, E. Anderson, M. R. Howells, C. Jacobsen and H. Rarback, "Soft X-ray Microscope using Fourier Transform Holography", Nuclear Instruments and Methods in Physics Research A 291, 74-79, (1990).

55. H. Ade, J. Kirz, S. L. Hulbert, E. Johnson, E. Anderson and D. Kern, "X-ray spectromicroscopy with a zone plate generated microprobe", Applied Physics Letters 56, 1841-1843, (1990). [ PDF]

56. C. Jacobsen, M. Howells, J. Kirz and S. Rothman, "X-ray holographic microscopy using photoresists", Journal of the Optical Society of America A 7, 1847-1861, (1990). [ PDF]



1989

57. C. Buckley, H. Rarback, R. Alforque, D. Shu, H. Ade, S. Hellman, N. Iskander, J. Kirz, S. Lindaas, I. McNulty, M. Oversluizen, E. Tang, D. Attwood, R. DiGennaro, M. Howells, C. Jacobsen, Y. Vladimirsky, S. Rothman, D. Kern and D. Sayre, "Soft x-ray imaging with the 35 period undulator at the NSLS", Review of Scientific Instruments 60, 2444-2447, (1989). [ PDF]



1988

58. H. Rarback, D. Shu, S. C. Feng, H. Ade, J. Kirz, I. McNulty, D. P. Kern, T. H. P. Chang, Y. Vladimirsky, N. Iskander, D. Attwood, K. McQuaid and S. Rothman, "Scanning x-ray microscope with 75-nm resolution", Review of Scientific Instruments 59, 52-59, (1988). [ PDF]



1987

59. H. Rarback, F. Cinotti, C. Jacobsen, J. M. Kenney, J. Kirz and R. Rosser, "Elemental analysis using differential absorption techniques", Biological Trace Element Research 13, 103-113, (1987).

60. B.-X. Yang, J. Kirz and S. Xu, "Characterization of phosphors in the soft x-ray region", Nuclear Instruments and Methods in Physics Research A 258, 141-145, (1987). [ PDF]

61. B. X. Yang and J. Kirz, "Extended x-ray-absorption fine structure of liquid water", Physical Review B 36, 1361-1364, (1987). [ PDF]

62. W. B. Yun and M. R. Howells, "High-resolution Fresnel zone plates for x-ray applications by spatial-frequency multiplication", Journal of the Optical Society of America 4, 34-40, (1987). [ PDF]

63. C. Jacobsen, J. Kenney, J. Kirz, R. Rosser, F. Cinotti, H. Rarback and J. Pine, "Quantitative imaging and microanalysis with a scanning soft x-ray microscope", Physics in Medicine and Biology 32, 431-437, (1987). [ PDF]

64. W. B. Yun, J. Kirz and D. Sayre, "Observation of the soft X-ray diffraction pattern of a single diatom", Acta Crystallographica A 43, 131-133, (1987). [ doi:10.1107/S0108767387099744] [ PDF]



1986

65. C. Jacobsen, J. Kenney, J. Kirz, I. McNulty, R. Rosser, F. Cinotti, H. Rarback and D. Shu, "Soft x-ray scanning microscopy: its practical use for elemental mapping at the NSLS U15 beamline", Photochemistry and Photobiology 44, 421-423, (1986).



1985

66. J. Kirz and H. Rarback, "Soft x-ray microscopes", Review of Scientific Instruments 56, 1-13, (1985). [ PDF]

67. B. X. Yang, J. Kirz and T. K. Sham, "Oxygen K-edge absorption-spectra of O2, CO, and CO2", Physics Letters A 110 (6), 301-304, (1985). [ doi:10.1016/0375-9601(85)90777-7]

68. J. M. Kenney, C. Jacobsen, J. Kirz, H. Rarback, F. Cinotti, W. Thomlinson, R. Rosser and G. Schidlovsky, "Absorption microanalysis with a scanning soft X-ray microscope: mapping the distribution of calcium in bone", Journal of Microscopy 138 (3), 321-328, (June 1985). [ PDF]



1977

69. D. Sayre, J. Kirz, R. Feder, D. M. Kim and E. Spiller, "Potential operating region for ultrasoft x-ray microscopy of biological specimens", Science 196, 1339-1340, (1977). [ PDF]

70. D. Sayre, J. Kirz, R. Feder, D. M. Kim and E. Spiller, "Transmission Microscopy of Unmodified Biological Materials: Comparative Radiation Dosages with Electrons and Ultrasoft X-ray Photons", Ultramicroscopy 2, 337-341, (1977). [ PDF]



1974

71. J. Kirz, "Phase zone plates for X rays and the extreme UV", Journal of the Optical Society of America 64, 301-309, (1974). [ PDF]

Collaborated Refereed Journal Publications

2008

1. H. H. Harris, S. Vogt, H. Eastgate, D. Legnini, B. Hornberger, Z. Cai and P. A. Lay, "Migration of mercury from dental amalgam through human teeth", Journal of Synchrotron Radiation 15, 123-128, (2008). [ PDF]

2. G. Cody, H. Ade, C. Alexander, T. Araki, A. Butterworth, H. Fleckenstein, G. Flynn, M. Gilles, C. Jacobsen, A. Kilcoyne, K. Messenger, S. Sandford, T. Tyliszcak, A. Westphal, S. Wirick and H. Tabuta, "Quantitative organic and light-element analysis of comet 81P/Wild 2 particles using C-, N-, O--XANES", Meteoritics \& Planetary Science 43 (1), 353-365, (2008). [ PDF]

3. M. D. de Jonge, B. Hornberger, C. Holzner, D. Legnini, D. Paterson, I. McNulty, C. Jacobsen and S. Vogt, "Quantitative phase imaging with a scanning transmission x-ray microscope", Physical Review Letters 100, 163902, (2008). [ doi:10.1103/PhysRevLett.100.163902] [ PDF]

4. J. Lehmann, D. Solomon, J. Kinyangi, L. Dathe, S. Wirick and C. Jacobsen, "Spatial complexity of soil organic matter forms at nanometre scales", Nature Geoscience 1, 238-242, (April 2008). [ PDF]



2006

5. M. Denecke, "Actinide Speciation using X-ray Spectroscopic Methods", Coordin. Chem. Rev. 250, 730-754, (2006).

6. M. Schumacher, I. Christl, R. D. Vogt, K. Barmettler, C. Jacobsen and R. Kretschmar, "Chemical composition of aquatic dissolved organic matter in fiveboreal forest catchments sampled in spring and fall seasons", Biogeochemistry 80, 263-275, (2006).

7. M. Anderson, T. Haraszti, G. Peterson, S. Wirick, C. Jacobsen, S. John and M. Grunze, "Scanning Tranmission X-ray Microscopic Analysis of Purifed Melanosomes of the Mouse Iris", Micron 37, 689-698, (2006). [ PDF]

8. A. Braun, S. Wirick, A. Kubatova, B. Mun and F. Huggins, "Photochemically induced decarboxylation in diesel soot extracts", Atmospheric Environment 40, 5837-5844, (2006). [ PDF]

9. P. Haberstroh, J. Brandes, Y. Gelinas, A. Dickens, S. Wirick and G. Cody, "Chemical Composition of the Graphitic Black Carbon Fraction in Riverine and Marine Sediments at Submicron Scales using Carbon X-ray Spectromicroscopy", Geochim. Cosmochim. Acta. 70, 1483-1494, (2006). [ PDF]

10. J. Kinyangi, D. Solomon, B. Liang, M. Lerotic, S. Wirick and J. Lehmann, "Nanoscale Biogeocomplexity of the Organomineral Assemblage in Soil: Application of STXM and C 1s-NEXAFS Spectroscopy", Soil Science Society of America Journal 70, (Sep-Oct 2006). [ PDF]

11. P. Thibault, V. Elser, C. Jacobsen, D. Shapiro and D. Sayre, "Reconstruction of a yeast cell from x-ray diffraction data", Acta Crystallographica A 62, 248-261, (2006). [ PDF]

12. H.N. Chapman, A. Barty, S. Marchesini, A. Noy, S. P. Hau-Riege, C. Cui, M.R. Howells, R. Rosen, H. He, J.C.H. Spence, U. Weierstall, T. Beetz, C. Jacobsen and D. Shapiro, "High resolution ab initio three-dimensional x-ray diffraction microscopy", Journal of the Optical Society of America A 23, 1179-1200, (2006). [ PDF]

13. M. Zolensky, T. Zega, H. Yano, S. Wirick, A. Westphal, M. Weisberg, I. Weber, J. Warren, M. Velbel, A. Tsuchiyama, P. Tsou, A. Toppani, N. Tomioka, N. Teslich, M. Taheri, J. Susini, R. Stroud, T. Stephan, F. Stadermann, C. Snead, S. Simon, A. Simionovici, T. See, F. Robert, F. Rietmeijer, W. Rao, M. Perronnet, D. Papanastassiou, K. Okudaira, K. Ohsumi, I. Ohnishi, K. Nakamura-Messenger, T. Nakamura, S. Mostefaoui, T. Mikouchi, A. Meibom, G. Matrajt, M. Marcus, H. Leroux, L. Lemelle, L. Le, A. Lanzirotti, F. Langenhorst, A. Krot, L. Keller, A. Kearsley, D. Joswiak, D. Jacob, H. Ishii, R. Harvey, K. Hagiya, L. Grossman, J. Grossman, G. Graham, M. Gounelle, P. Gillet, M. Genge, G. Flynn, T. Ferroir, S. Fallon, D. Ebel, Z. Dai, P. Cordier, B. Clark, M. Chi, A. Butterworth, D. Brownlee, J. Bridges, S. Brennan, A. Brearley, J. Bradley, P. Bleuet, P. Bland and R. Bastien, "Mineralogy and Petrology of Comet 81P/Wild 2 Nucleus Samples", Science 314 (5806), 1735-1739, (2006). [ doi:10.1126/science.1135842] [ PDF]

14. D. Brownlee, P. Tsou, J. Aléon, C. Alexander, T. Araki, S. Bajt, G. Baratta, R. Bastien, P. Bland, P. Bleuet, J. Borg, J. Bradley, A. Brearley, F. Brenker, S. Brennan, J. Bridges, N. Browning, J. Brucato, E. Bullock, M. Burchell, H. Busemann, A. Butterworth, M. Chaussidon, A. Cheuvront, M. Chi, M. Cintala, B. Clark, S. Clemett, G. Cody, L. Colangeli, G. Cooper, P. Cordier, C. Daghlian, Z. Dai, L. D'Hendecourt, Z. Djouadi, G. Dominguez, T. Duxbury, J. Dworkin, D. Ebel, T. Economou, S. Fakra, S. Fairey, S. Fallon, G. Ferrini, T. Ferroir, H. Fleckenstein, C. Floss, G. Flynn, I. Franchi, M. Fries, Z. Gainsforth, J.-P. Gallien, M. Genge, M. Gilles, P. Gillet, J. Gilmour, D. Glavin, M. Gounelle, M. Grady, G. Graham, P. Grant, S. Green, F. Grossemy, L. Grossman, J. Grossman, Y. Guan, K. Hagiya, R. Harvey, P. Heck, G. Herzog, P. Hoppe, F. Hörz, J. Huth, I. Hutcheon, K. Ignatyev, H. Ishii, M. Ito, D. Jacob, C. Jacobsen, S. Jacobsen, S. Jones, D. Joswiak, A. Jurewicz, A. Kearsley, L. Keller, H. Khodja, D. Kilcoyne, J. Kissel, A. Krot, F. Langenhorst, A. Lanzirotti, L. Le, L. Leshin, J. Leitner, L. Lemelle, H. Leroux, M.-C. Liu, K. Luening, I. Lyon, G. MacPherson, M. Marcus, K. Marhas, B. Marty, G. Matrajt, K. McKeegan, A. Meibom, V. Mennella, K. Messenger, S. Messenger, T. Mikouchi, S. Mostefaoui, T. Nakamura, T. Nakano, M. Newville, L. Nittler, I. Ohnishi, K. Ohsumi, K. Okudaira, D. Papanastassiou, R. Palma, M. Palumbo, R. Pepin, D. Perkins, M. Perronnet, P. Pianetta, W. Rao, F. Rietmeijer, F. Robert, D. Rost, A. Rotundi, R. Ryan, S. Sandford, C. Schwandt, T. See, D. Schlutter, J. Sheffield-Parker, A. Simionovici, S. Simon, I. Sitnitsky, C. Snead, M. Spencer, F. Stadermann, A. Steele, T. Stephan, R. Stroud, J. Susini, S. Sutton, Y. Suzuki, M. Taheri, S. Taylor, N. Teslich, K. Tomeoka, N. Tomioka, A. Toppani, J. Trigo-Rodríguez, D. Troadec, A. Tsuchiyama, A. Tuzzolino, T. Tyliszczak, K. Uesugi, M. Velbel, J. Vellenga, E. Vicenzi, L. Vincze, J. Warren, I. Weber, M. Weisberg, A. Westphal, S. Wirick, D. Wooden, B. Wopenka, P. Wozniakiewicz, I. Wright, H. Yabuta, H. Yano, E. Young, N. Zare, T. Zega, K. Ziegler, L. Zimmerman, E. Zinner and M. Zolensky, "Comet 81P/Wild 2 Under a Microscope", Science 314 (5806), 1711-1716, (2006). [ doi:10.1126/science.1135840] [ PDF]

15. S. Sandford, J. Aléon, C. Alexander, T. Araki, S. Bajt, G. Baratta, J. Borg, J. Bradley, D. Brownlee, J. Brucato, M. Burchell, H. Busemann, A. Butterworth, S. Clemett, G. Cody, L. Colangeli, G. Cooper, L. D'Hendecourt, Z. Djouadi, J. Dworkin, G. Ferrini, H. Fleckenstein, G. Flynn, I. Franchi, M. Fries, M. Gilles, D. Glavin, M. Gounelle, F. Grossemy, C. Jacobsen, L. Keller, D. Kilcoyne, J. Leitner, G. Matrajt, A. Meibom, V. Mennella, S. Mostefaoui, L. Nittler, M. Palumbo, D. Papanastassiou, F. Robert, A. Rotundi, C. Snead, M. Spencer, F. Stadermann, A. Steele, T. Stephan, P. Tsou, T. Tyliszczak, A. Westphal, S. Wirick, B. Wopenka, H. Yabuta, R. Zare and M. Zolensky, "Organics Captured from Comet 81P/Wild 2 by the Stardust Spacecraft", Science 314 (5806), 1720-1724, (2006). [ doi:10.1126/science.1135841] [ PDF]



2005

16. A. Braun, F.E. Huggins, N. Shah, Y. Chen, S. Wirick, S.B. Mun, C. Jacobsen and G.P. Huffman, "Advantages of soft X-ray absorption over TEM-EELS for solid carbon studies—a comparative study on diesel soot with EELS and NEXAFS", Carbon 43, 117-124, (2005). [ PDF]

17. D.G. Mancosky, L.A. Lucia, H. Nanko, S. Wirick, A.W. Rudie and R. Braun, "Novel visualization studies of lignocellulosic oxidation chemistry by application of C-near edge X-ray absorption fine structure spectroscopy", Cellulose 12, 35-41, (2005). [ PDF]

18. J. Lehmann, B. Liang, D. Solomon, M. Lerotic, F. Luizão, J. Kinyangi, T. Schäfer, S. Wirick and C. Jacobsen, "Near-edge X-ray absorption fine structure (NEXAFS) spectroscopy for mapping nanoscale distribution of organic carbon forms in soil: application to black carbon particles", Global Biogeochemical Cycles 19, 1013-1025, (2005). [ PDF]

19. T. Schäfer, G. Buckau, R. Artinger, J.I. Kim, S. Geyer, M. Wolf, W.F. Bleam, S. Wirick and C. Jacobsen, "Origin and mobility of fulvic acids in the Gorleben aquifer system: implications from isotopic data and carbon/sulfur XANES", Organic Geochemistry 36, 567-582, (2005). [ PDF]



2004

20. G.J. Flynn, L.P. Keller, C. Jacobsen and S. Wirick, "An assessment of the amount and types of organic matter contributed to the Earth by interplanetary dust", Advances in Space Research 33, 57-66, (2004). [ PDF]

21. J. A. Brandes, C. Lee, S. Wakeham, M. Peterson, C. Jacobsen, S. Wirick and G. Cody, "Examining marine particulate organic matter at sub-micron scales using scanning transmission X-ray microscopy and carbon X-ray absorption near edge structure spectroscopy", Marine Chemistry 92, 107-121, (2004). [ PDF]

22. J. Miao, H. N. Chapman, J. Kirz, D. Sayre and K. O. Hodgson, "Taking x-ray diffraction to the limit: macromolecular structures from femtosecond x-ray pulses and diffraction microscopy of cells with synchrotron radiation", Annual Review of Biophysics and Biomolecular Structure 33, 157-176, (2004). [ PDF]

23. A. Braun, N. Shah, F.E. Huggins, G.P. Huffman, S. Wirick, C. Jacobsen, K. Kelly and A.F. Sarofim, "A study of diesel PM with X-ray microspectroscopy", Fuel 83 (7-8), 997-1000, (2004). [ PDF]

24. L. P. Keller, S. Messenger, G. J. Flynn, S. Clemett, S. Wirick and C. Jacobsen, "The nature of molecular cloud material in interplanetary dust", Geochimica et Cosmochimica Acta 68 (11), 2577-2589, (2004). [ PDF]

25. C.K. Boyce, M.A. Zwieniecki, G.D. Cody, C. Jacobsen, S. Wirick, A.H. Knoll and N.M. Holbrook, "Evolution of xylem lignification and hydrogel transport regulation", Proceedings of the National Academy of Sciences 101 (50), 17555-17558, (2004). [ PDF]



2003

26. Y. Wang, W. Yun and C. Jacobsen, "Achromatic Fresnel optics for wideband extreme-ultraviolet and X-ray imaging", Nature 424, 50-53, (2003). [ PDF]

27. K. Evans-Lutterodt, J.M. Ablett, A. Stein, C.-C. Kao, D.M. Tennant, F. Klemens, A. Taylor, C. Jacobsen, P.L. Gammel, H. Huggins, S. Ustin, G. Bogart and L. Ocola, "Single-element elliptical hard x-ray micro-optics", Optics Express 11 (8), 919-926, (2003). [ PDF]

28. G.J. Flynn, L.P. Keller, M. Feser, S. Wirick and C. Jacobsen, "The origin of organic matter in the solar system: Evidence from the interplanetary dust particles", Geochimica et Cosmochimica Acta 67 (24), 4791-4806, (2003). [ PDF]

29. B. S. Twining, S. B. Baines, N. S. Fisher, J. Maser, S. Vogt, C. Jacobsen, A. Tovar-Sanchez and S. A. Sañudo-Wilhelmy, "Quantifying trace elements in individual aquatic protist cells with a synchrotron x-ray fluorescence microprobe", Analytical Chemistry 75, 3806-3816, (2003). [ PDF]



2002

30. R. A. Bartels, A. Paul, H. Green, H. C. Kapteyn, M. M. Murnane, S. Backus, I. P. Christov, Y. Liu, D. Attwood and C. Jacobsen, "Generation of spatially coherent light at extreme ultraviolet wavelengths", Science 297 (5580), 376-378, (2002). [ PDF]

31. C.K. Boyce, G.D. Cody, M. Feser, C. Jacobsen, A.H Knoll and S. Wirick, "Organic chemical differentiation within fossil plant cell walls detected with X-ray spectromicroscopy", Geology 30, 1039-1042, (2002). [ PDF]



2001

32. M.R. Howells, C.J. Jacobsen, S. Marchesini, S. Miller, J.C.H. Spence and U. Weirstall, "Toward a practical x-ray Fourier holography at high resolution", Nuclear Instruments and Methods in Physics Research A 467-468, 864-867, (2001).



2000

33. A. R. Kalukin, B. Winn, Y. Wang, C. Jacobsen, Z. H. Levine and J. Fu, "Calibration of high-resolution x-ray tomography with atomic force microscopy", Journal of Research of the National Institute of Standards and Technology 105 (6), 867-874, (2000).



1996

34. S. Lindaas, M. Howells, C. Jacobsen and A. Kalinovsky, "X-ray holographic microscopy by means of photoresist recording and atomic-force microscope readout", Journal of the Optical Society of America A 13 (9), 1788-1800, (1996). [ PDF]



1995

35. C.-H. Ko, J. Kirz, H. Ade, E. Johnson, S. Hulbert and E. Anderson, "Development of a second generation scanning photoemission microscope with a zone plate generated microprobe at the National Synchrotron Light Source", Review of Scientific Instruments 66 (2), 1416-1418, (1995).



1992

36. C. J. Buckley, G. F. Foster, R. E. Burge, S. Y. Ali, C. A. Scotchford, J. Kirz and M. L. Rivers, "Elemental imaging of cartilage by scanning x-ray microscopy", Review of Scientific Instruments 63, 588-590, (1992).

37. B. W. Loo, Jr., S. Williams, S. Meizel and S. S. Rothman, "X-ray stereomicroscopy: high resolution 3-D imaging of human spermatozoa in aqueous suspension with natural contrast", Journal of Microscopy 166, RP5-RP6, (1992).



1991

38. D. M. Tennant, J. E. Gregus, C. Jacobsen and E. L. Raab, "Construction and test of phase zone plates for x-ray microscopy", Optics Letters 16, 621-623, (1991).

39. M. R. Howells, J. Kirz and D. Sayre, "X-ray Microscopes", Scientific American 264 (2), 88-94, (feb 1991).



1990

40. H. Rarback, C. Buckley, K. Goncz, H. Ade, E. Anderson, D. Attwood, P. Batson, S. Hellman, C. Jacobsen, D. Kern, J. Kirz, S. Lindaas, I. McNulty, M. Oversluizen, M. Rivers, S. Rothman, D. Shu and E. Tang, "The scanning transmission microscope at the NSLS", Nuclear Instruments and Methods in Physics Research A 291, 54-59, (1990).

41. H. Rarback, C. Buckley, H. Ade, F. Camilo, R. DiGennaro, S. Hellman, M. Howells, N. Iskander, C. Jacobsen, J. Kirz, S. Krinsky, S. Lindaas, I. McNulty, M. Oversluizen, S. Rothman, D. Sayre, M. Sharnoff and D. Shu , "Coherent Radiation for X-ray Imaging - The Soft X-Ray Undulator and the X1A Beamline at the NSLS", Journal of X-ray Science and Technology 2, 274-296, (1990).



1989

42. T. K. Sham, B. X. Yang, J. Kirz and J. S. Tse, "K-edge near-edge x-ray-absorption fine structure of oxygen- and carbon-containing molecules in the gas phase", Physical Review A 40, 652-669, (1989).

43. S. S. Rothman, N. Iskander, D. Attwood, Y. Vladimirsky, K. McQuaid, J. Grendel, J. Kirz, H. Ade, I. McNulty, D. Kern, T. H. P. Chang and H. Rarback, "The interior of a whole and unmodified biological object—the zymogen granule—viewed with a high-resolution x-ray microscope", Biochimica et Biophysica Acta 991, 484-486, (1989).



1988

44. D. Shu, D. P. Siddons, H. Rarback and J. Kirz, "Two-dimensional laser interferometric encoder for the soft x-ray scanning microscope at the NSLS", Nuclear Instruments and Methods in Physics Research A 266, 313-317, (1988). [ PDF]



1987

45. M. Howells, C. Jacobsen, J. Kirz, R. Feder, K. McQuaid and S. Rothman, "X-ray holograms at improved resolution: a study of zymogen granules", Science 238, 514-517, (1987).



1986

46. M. R. Howells, M. A. Iarocci and J. Kirz, "Experiments in x-ray holographic microscopy using synchrotron radiation", Journal of the Optical Society of America A 3, 2171-2178, (1986).



1985

47. M. Howells, J. Kirz, D. Sayre and G. Schmahl, "Soft-x-ray microscopes", Physics Today 38, 22-32, (aug 1985).



1976

48. R. Feder, D. Sayre, E. Spiller, J. Topalian and J. Kirz, "Specimen replication for electron microscopy using x rays and x-ray resist", Journal of Applied Physics 47, 1192-1193, (1976). [ PDF]

Conference Proceedings / Other Publications

2009

1. H. Miao, K. Downing, X. Huang, J. Kirz, S. Marchesini, J. Nelson, D. Shapiro, J. Steinbrener and A. Stewart, "Cryo diffraction microscopy: Ice conditions and finite supports", Journal of Physics: Conference Series 186, 012055, (2009). [ doi:10.1088/1742-6596/186/1/012055] [ PDF]

2. J. Kirz and C. Jacobsen, "The history and future of X-ray microscopy", Journal of Physics: Conference Series 186, 012001, (2009). [ doi:10.1088/1742-6596/186/1/012001] [ PDF]

3. M.D. de Jonge, B. Hornberger, C. Holzner, B. Twining, D. Paterson, I. McNulty, C. Jacobsen and S. Vogt, "Quantitative scanning differential phase contrast microscopy", Journal of Physics: Conference Series 186, 012006, (2009). [ doi:10.1088/1742-6596/186/1/012006] [ PDF]

4. J. Lehmann, D. Solomon, J. Brandes, H. Fleckenstein, C. Jacobsen and J. Thieme, "Synchrotron-Based Near-Edge X-ray Spectroscopy of Natural Organic Matter in Soils and Sediments", in N. Senesi, B. Xing and P. M. Huang (eds.), Biophysico-Chemical Processes Involving Natural Nonliving Organic Matter in Environmental Systems, John Wiley \& Sons, Inc., Wiley-IUPAC series, Hoboken, New Jersey, 729-781, (2009).



2007

5. M. D. de Jonge, S. Vogt, D. Legnini, I. McNulty, C. Rau, D. Paterson, B. Hornberger, C. Holzner and C. Jacobsen, "A method for phase reconstruction from measurements obtained using a configured detector with a scanning transmission X-ray microscope", Nuclear Instruments and Methods in Physics Research A 582, 218-220, (2007). [ PDF]



2006

6. G.J. Flynn, L.P. Keller, S. Wirick and C. Jacobsen, "Organic Analysis of Extraterrestrial Materials at the Sub-micron Scale", in S. Aoki, Y. Kagoshima and Y. Suzuki (eds.), X-ray Microscopy: Proceedings of the 8th International Conference, The Institute of Pure and Applied Physics (IPAP), IPAP Conference Series 7, Tokyo, Japan, 315-317, (2006). [ PDF]

7. B. Hornberger, M. Feser, C. Jacobsen, S. Vogt, D. Legnini, D. Paterson, P. Rehak, G. De Geronimo and B. M. Palmer, "Combined Fluorescence and Phase Contrast Imaging at the Advanced Photon Source", in S. Aoki, Y. Kagoshima and Y. Suzuki (eds.), X-ray Microscopy: Proceedings of the 8th International Conference, The Institute of Pure and Applied Physics (IPAP), IPAP Conference Series 7, Tokyo, Japan, 396-398, (2006). [ PDF]

8. E. Lima, D. Shapiro, P. Thibault, T. Beetz, V. Elser, M. Howells, X. Huang, C. Jacobsen, J. Kirz, H. Miao, A.M. Neiman, A. Stewart and D. Sayre, "Diffraction Microscopy: Reconstruction of the Complex-Valued Image of a Yeast Cell", in S. Aoki, Y. Kagoshima and Y. Suzuki (eds.), X-ray Microscopy: Proceedings of the 8th International Conference, The Institute of Pure and Applied Physics (IPAP), IPAP Conference Series 7, Tokyo, Japan, 392-395, (2006). [ PDF]



2004

9. G. Flynn, L. Keller, C. Jacobsen and S. Wirick, "The Origin of Organic Matter in the Solar System: Evidence from the Interplanetary Dust Particles", in R.P. Norris and F.H. Stootman (eds.), Bioastronomy 2002: Life Among the Stars S-213, International Astronomical Union, 275-280, (2004).

10. C. Jacobsen, S. Wang, W. Yun and S. Frigo, "Calculation of x-ray refraction from near-edge absorption data only", in R. Soufli and J. F. Seely (eds.), Optical Constants of Materials for UV to X-ray Wavelengths 5538, Proceedings of SPIE, 23-30, (2004). [ PDF]



2003

11. T. Beetz, C. Jacobsen, C.-C. Kao, J. Kirz, O. Mentes, C. Sanchez-Hanke, D. Sayre and D. Shapiro, "Development of a novel apparatus for experiments in soft x-ray diffraction imaging and diffraction tomography", Journal de Physique IV 104, 27-30, (2003). [ PDF]

12. T. Beetz, C. Jacobsen and A. Stein, "Soft x-ray diffraction tomography: simulations and first experimental results", Journal de Physique IV 104, 31-34, (2003). [ PDF]

13. M. Feser, C. Jacobsen, P. Rehak and G. DeGeronimo, "Scanning transmission x-ray microscopy with a segmented detector", Journal de Physique IV 104, 529-534, (2003). [ PDF]

14. G.J. Flynn, L.P. Keller, S. Wirick, C. Jacobsen and S.R. Sutton, "Analysis of interplanetary dust particles by soft and hard X-ray microscopy", Journal de Physique IV 104, 367-372, (2003). [ PDF]

15. G. Gleber, J. Thieme, J. Niemeyer and M. Feser, "Interaction of organic substances with iron studied by O1s spectroscopy—Development of an analysis program", Journal de Physique IV 104, 429-432, (2003). [ PDF]

16. E. Lima, D. Shapiro, J. Kirz and D. Sayre, "Algorithmic image reconstruction using iterative phase retrievalschema", Journal de Physique IV 104, 631-634, (2003). [ PDF]

17. B. Twining, S. Baines, N. Fisher, C. Jacobsen and J. Maser, "Quantification and localization of trace metals in natural plankton cells using a synchrotron X-ray fluorescence microprobe", Journal de Physique IV 104, 435-438, (2003). [ PDF]

18. S. Vogt, J. Maser and C. Jacobsen, "Data analysis for X-ray fluorescence imaging", Journal de Physique IV 104, 617-622, (2003). [ PDF]

19. T. Beetz, M. Feser, H. Fleckenstein, B. Hornberger, C. Jacobsen, J. Kirz, M. Lerotic, E. Lima, M. Lu, D. Sayre, D. Shapiro, A. Stein, D. Tennant and S. Wirick, "Soft X-ray Microscopy at the NSLS", Synchrotron Radiation News 16 (3), 11-15, (2003). [ PDF]

20. C. Jacobsen, M. Feser, M. Lerotic, S. Vogt, J. Maser and T. Schäfer, "Cluster analysis of soft x-ray spectromicroscopy data", Journal de Physique IV 104, 623-626, (2003). [ PDF]

21. C. Schmidt, J. Thieme, U. Neuhäusler, C. Jacobsen, B. Kaulich, M. Salomée and J. Susini, "Spectromicroscopy of soil colloids", Journal de Physique IV 104, 405-408, (2003). [ PDF]



2002

22. T. Beetz, M. Feser, C. Jacobsen, J. Kirz, D. Sayre, D. Shapiro, Y. Sheynkin, A. Stein and S. Wirick, "Soft x-ray microscopy at the NSLS", in Proceedings of the IEEE 2002 International Symposium on Biomedical Imaging: Macro to Nano, 137-140, (2002).

23. C. Jacobsen, T. Beetz, M. Feser, A. Osanna, A. Stein and S. Wirick, "Spectromicroscopy of biological and environmental systems at Stony Brook: instrumentation and analysis", Surface Review and Letters 9 (1), 185-191, (2002).



2001

24. A. Osanna, C. Jacobsen, J. Kirz and Y. Sheynkin, "Cryogenic scanning transmission microscopy for biochemical analysis of the sperm", Fertility and Sterility 76 (3 (Supplement 1)), S265 (P459), (2001).

25. A. Scheinost, R. Kretzschmar, I. Christl and C. Jacobsen, "Carbon group chemistry of humic and fulvic acid: A comparison of C-1s NEXAFS and 13C-NMR spectroscopies", in Humic Substances: Structures, Models and Functions, Royal Society of Chemistry, Cambridge, 37-45, (2001). [ PDF]

26. M. Feser, C. Jacobsen, P. Rehak, G. DeGeronimo, P. Holl and L. Strüder, "Novel Integrating Solid State Detector with Segmentation for Scanning Transmission Soft X-ray Microscopy", in I. McNulty (ed.), X-ray micro- and nano-focusing: applications and techniques II 4499, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 117-125, (2001). [ PDF]

27. M. Feser, T. Beetz, C. Jacobsen, J. Kirz, S. Wirick, A. Stein and T. Schäfer, "Scanning transmission soft x-ray microscopy at beamline X-1A at the NSLS - Advances in instrumentation and selected applications", in D. A. Tichenor and J. A. Folta (eds.), Soft X-Ray and EUV Imaging Systems II 4506, Society of Photo-Optical Instrumentation Engineers (SPIE), Proceedings of SPIE, Bellingham, Washington, 146-153, (2001). [ PDF]



2000

28. C. Jacobsen, "X-ray microscopy using FELs: possibilities and challenges", in G. S. Edwards and J. C. Sutherland (eds.), Biomedical Applications of Free-Electron Lasers 3925, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 16-25, (2000). [ PDF]

29. K. Kaznacheyev, A. Osanna and B. Winn, "Sealed cell for in-water measurements", in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, (2000). [ PDF]

30. J. Miao, P. Charalambous, J. Kirz and D. Sayre, "Extending the methodology of x-ray crystallography to allow x-ray microscopy without x-ray optics", in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, (2000). [ PDF]

31. M. Feser, T. Beetz, M. Carlucci-Dayton and C. Jacobsen, "Instrumentation advances and detector development with the Stony Brook scanning transmission x-ray microscope", in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 367-372, (2000). [ PDF]

32. M. R. Howells, B. Calef, C. J. Jacobsen, J. H. Spence and W. Yun, "A modern approach to x-ray holography", in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 586-592, (2000). [ PDF]

33. U. Neuhäusler, S. Abend, S. Ziesmer, D. Schulze, D. Stott, K. Jones, H. Feng, C. Jacobsen and G. Lagaly, "Soft x-ray spectromicroscopy on hydrated colloidal and environmental science samples", in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 323-328, (2000).

34. A. Osanna and C. Jacobsen, "Principle component analysis for soft x-ray spectromicroscopy", in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 350-357, (2000). [ PDF]

35. F. Polack, D. Joyeux, M. Feser, D. Phalippou, M. Carlucci-Dayton, K. Kaznacheyev and C. Jacobsen, "Demonstration of phase contrast in scanning transmission x-ray microscopy: comparison of images obtained at NSLS X1-A with numerical simulations", in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 573-580, (2000). [ PDF]

36. C. Schmidt, J. Thieme, U. Neuhäusler, U. Schulte-Ebbert, G. Abbt-Braun, C. Specht and C. Jacobsen, "Association of particles and structures in the presence of organicmatter", in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 313-318, (2000).

37. D. Tennant, S. Spector, A. Stein and C. Jacobsen, "Electron beam lithography of Fresnel zone plates using a rectilinear machine and trilayer resists", in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 601-606, (2000). [ PDF]

38. C. Jacobsen, S. Abend, T. Beetz, M. Carlucci-Dayton, M. Feser, K. Kaznacheyev, J. Kirz, J. Maser, U. Neuhäusler, A. Osanna, A. Stein, C. Vaa, Y. Wang, B. Winn and S. Wirick, "Recent developments in scanning microscopy at Stony Brook", in W. Meyer-Ilse, T. Warwick and D. Attwood (eds.), X-ray Microscopy: Proceedings of the Sixth International Conference, American Institute of Physics, Melville, NY, 12-18, (2000). [ PDF]



1999

39. C. Jacobsen, "Soft X-ray Microscopy", Trends in Cell Biology 9 (2), 44-47, (Feb. 1999). [ PDF]

40. C. Jacobsen and U. Neuhäusler, "Soft x-ray optics and spectromicroscopy: potential for soil science specimens", in D. G. Schulze, J. W. Stucki and P. M. Bertsch (eds.), Synchrotron Methods in Clay Science 8, Clay Minerals Society Workshop Lecture Series, Boulder, CO, 183-206, (1999).



1998

41. G.D. Cody, H. Ade, S. Wirick, G.D. Mitchell and A. Davis, "Determination of chemical-structural changes in vitrinite accompanying luminescence alteration using C-NEXAFS analysis", Organic Geochemistry 28, 441-456, (1998).

42. G. J. Flynn, L. P. Keller, C. Jacobsen and S. Wirick, "Carbon and potassium mapping and carbon bonding state measurements on interplanetary dust", Meteoritics and Planetary Science 33 (4, supplement), A50-51, (1998).

43. G. J. Flynn, L. P. Keller, C. Jacobsen and S. Wirick, "Carbon in Allan Hills 84001 carbonate and rim", Meteoritics and Planetary Science 33 (4, supplement), A50, (1998).

44. G. J. Flynn, L. P. Keller, C. Jacobsen and S. Wirick, "Carbon mapping and carbon bonding state measurements on interplanetary dust particles", in Lunar and Planetary Science XXIX, Lunar and Planetary Institute, Houston, TX, USA, (1998), Abstract 1159.

45. G. J. Flynn, L. P. Keller, M. A. Miller, C. Jacobsen and S. Wirick, "Organic compounds associated with carbonate globules and rims in the ALH84001 meteorite", in Lunar and Planetary Science XXIX, Lunar and Planetary Institute, Houston, TX, USA, (1998), Abstract 1156.

46. R. Balhorn, R. E. Braun, B. Breed, J. T. Brown, D. Evenson, J. M. Heck, J. Kirz, I. McNulty, W. Meyer-Ilse and X. Zhang, "Applications of x-ray microscopy to the analysis of sperm chromatin", in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, II-29-46, (1998).

47. J. Boese, A. Osanna, C. Jacobsen, J. Kirz, E. Tall and X. Zhang, "X-ray absorption near-edge structure of amino acids and peptides", in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, III-89-93, (1998).

48. H. Zhang, G. R. Zhuang, H. Ade, C-H. Ko, B. Winn, J. Kirz, D. Leta, R. Polizotti, S. Cameron, S. Hulbert and E. Johnson, "Recent Progress with the Scanning Photoemission Microscope at the National Synchrotron Light Source", in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, II-143-156, (1998).

49. S. Lindaas, B. Calef, K. Downing, M. Howells, C. Magowan, D. Pinkas and C. Jacobsen, "X-ray holography of fast-frozen hydrated biological samples", in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, II-75-86, (1998).

50. J. Maser, C. Jacobsen, J. Kirz, A. Osanna, S. Spector, S. Wang and J. Warnking, "Development of a cryo scanning x-ray microscope at the NSLS", in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, I-35-44, (1998).

51. S. J. Spector, C. J. Jacobsen and D. M. Tennant, "Zone plates for a scanning transmission x-ray microscope", in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, IV-13-19, (1998).

52. C. Jacobsen, R. Medenwaldt and S. Williams, "A perspective on biological x-ray and electron microscopy", in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, II-93-102, (1998). [ PDF]

53. M. Feser, M. Carlucci-Dayton, C. J. Jacobsen, J. Kirz, U. Neuhäusler, G. Smith and B. Yu, "Applications and instrumentation advances with the Stony Brook scanning transmission x-ray microscope", in I. McNulty (ed.), X-ray microfocusing: applications and techniques 3449, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 19-29, (1998). [ PDF]



1996

54. A. Osanna, C. Jacobsen, A. Kalinovsky, J. Kirz, J. Maser and S. Wang, "X-ray microscopy: preparations for studies of frozen hydrated specimens", Scanning Microscopy 10 (supplement), 349-358, (1996).

55. S. Spector, C. Jacobsen and D. Tennant, "Fabrication of Fresnel zone plates for x-ray microscopy: diffractive optics for soft x rays", in Diffractive optics and micro-optics 5, Technical Digest Series, Optical Society of America, Washington, D.C., 328-331, (1996).

56. B. Winn, X. Hao, C. Jacobsen, J. Kirz, J. Miao, S. Wirick, H. Ade, C. Buckley, M. Howells, S. Hulbert, I. McNulty and T. Oversluizen, "Considerations for a soft x-ray spectromicroscopy beamline", in L. E. Berman and J. Arthur (eds.), Optics for High-Brightness Synchrotron Radiation Beamlines II 2856, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 100-109, (1996).

57. C. Jacobsen, "Soft-x-ray microscopy: imaging of biological systems", in E. Burattini and A. Balerna (eds.), Biomedical Applications of Synchrotron Radiation {CXXVIII} {Corso}, IOS Press, Società Italiana di Fisica, Amsterdam, 91-109, (1996).



1995

58. C.-H. Ko, J. Kirz, H. Ade, S. Hulbert, E. Johnson and E. Anderson, "Applications of the X1A scanning photoemission spectromicroscope for element identification on material surfaces", in L. J. Terminello, N. D. Shinn, G. E. Ice, K. L. D'Amico and D. L. Perry (eds.), Applications of Synchrotron Radiation Techniques to Materials Science II 375, Materials Research Society Symposium Proceedings, Boston, MA, 303-305, (1995).

59. C.-H. Ko, J. Kirz, K. Maier, B. Winn, H. Ade, S. Hulbert, E. Johnson and E. Anderson, "Chemical state mapping on materials surfaces with the X1A second generation scanning photoemission microscope (X1A SPEM-II)", in W. Yun (ed.), X-ray microbeam technology and applications 2516, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 150-159, (1995).

60. J. M. Maser, H. N. Chapman, C. J. Jacobsen, A. Kalinovsky, J. Kirz, A. Osanna, S. Spector, S. Wang, B. Winn, S. Wirick and X. Zhang, "Scanning transmission x-ray microscope at the NSLS: from XANES to cryo", in W. Yun (ed.), X-ray microbeam technology and applications 2516, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 78-89, (1995).



1994

61. J. Kirz, H. Ade, C. Jacobsen, C. H. Ko, S. Lindaas, S. Williams and X. Zhang, "Soft X-ray Microscopy—Physical Basis and Recent Developments", in Proceedings of the Fifth Asia-Pacific Physics Conference 1, World Scientific, Singapore and River Edge, New Jersey, 200-215, (1994).

62. J. Kirz, C. Jacobsen, S. Lindaas, S. Williams, X. Zhang, E. Anderson and M. Howells, "Soft X-Ray Microscopy at the National Synchrotron Light Source", in B. Chance, D. Deisenhober, S. Ebashi, D. T. Goodhead, J. R. Helliwell, H. E. Huxley, T. Iizuka, J. Kirz, T. Mitsui, E. Rubenstein, N. Sakabe, T. Sasaki, G. Schmahl, H. Sturhmann, K. Wüthrich and G. Zaccai (eds.), Synchrotron Radiation in the Biociences, Clarendon Press, Oxford, 563-571, (1994).

63. H. Chapman, S. Williams and C. Jacobsen, "Imaging of 30 nm gold spheres by dark-field scanning transmission x-ray microscopy", in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 52-53, (1994).

64. C. Jacobsen, J. Fu, Y. Wang and S. Williams, "Scanning luminescence x-ray microscopy: progress towards selective staining using microspheres", in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 74-75, (1994).

65. S. Williams, C. Jacobsen, J. Kirz, S. S. Lamm, J. van't Hof and X. Zhang, "Metaphase chromosome DNA mass fraction is independent of species", in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 46-47, (1994).

66. Y. Wang and C. Jacobsen, "Modelling of dissolution and resolution in contact x-ray microscopy", in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 62-63, (1994).

67. X. Zhang, R. Balhorn, C. Jacobsen, J. Kirz and S. Williams, "Mapping DNA and protein in biological samples using the scanning transmission x-ray microscope", in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 50-51, (1994).

68. S. Lindaas, C. Jacobsen, A. Kalinovsky and M. Howells, "X-ray Gabor holography: recent progress", in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 72-73, (1994).

69. M. R. Howells, C. J. Jacobsen and S. Lindaas, "X-ray holographic microscopy using the atomic-force microscope", in V. V. Aristov and A. I. Erko (eds.), X-ray Microscopy IV, Bogorodskii Pechatnik, Proceedings of the 4th International Conference, Chernogolovka, Russia, September 20-24, 1993, Chernogolovka, Russia, 413-427, (1994).

70. C. Jacobsen, E. Anderson, H. Chapman, J. Kirz, S. Lindaas, M. Rivers, S. Wang, S. Williams, S. Wirick and X. Zhang, "The X-1A Scanning Transmission X-ray Microscope: Optics and Instrumentation", in V. V. Aristov and A. I. Erko (eds.), X-ray Microscopy IV, Bogorodskii Pechatnik, Proceedings of the 4th International Conference, Chernogolovka, Russia, September 20-24, 1993, Chernogolovka, Russia, 304-321, (1994).

71. J. Kirz, H. Ade, R. E. Botto, G. D. Cody, J. Fu, C. Jacobsen, S. Lindaas, W. F. Mangel, W. J. McGrath, V. Oehler, J. van't Hof, S. Williams, S. Wirick and X. Zhang, "Scanning transmission x-ray microscopy at the NSLS", in V. V. Aristov and A. I. Erko (eds.), X-ray Microscopy IV, Bogorodskii Pechatnik, Proceedings of the 4th International Conference, Chernogolovka, Russia, September 20-24, 1993, Chernogolovka, Russia, 41-61, (1994).



1993

72. H. Ade, C. Jacobsen, J. Kirz, C.-H. Ko, S. Lindaas, S. Williams, X. Zhang, C. Buckley, E. Anderson, K. Goncz and S. Rothman, "Recent developments in scanning soft x-ray microscopy", in F. J. Wuilleumier, Y. Petroff and I. Nenner (eds.), Vacuum Ultraviolet Radiation Physics: Proceedings of the 10th VUV conference, World Scientific Publishing, Singapore, 523-533, (1993), Paris, July 27-31, 1992.



1992

73. S. Williams, C. Jacobsen, J. Kirz and X. Zhang, "Imaging with the Brookhaven scanning transmission x-ray microscope", in J. M. Schnur and M. Peckerar (eds.), Synthetic Microstructures in Biological Research, Plenum Press, New York, 109-119, (1992).

74. C. Jacobsen, S. Lindaas, M. Howells and I. McNulty, "X-ray holography at the National Synchrotron Light Source", in P. B. Kenway, P. J. Duke, G. W. Lorimer, T. Mulvey, I. W. Drummond, G. Love, A. G. Michette and M. Stedman (eds.), X-Ray Optics and Microanalysis 1992, IOP Publishing, Bristol, 547-554, (1992).

75. C. Jacobsen, H. Ade, J. Kirz, C.-H. Ko, S. Williams, X. Zhang, E. Anderson and D. Kern, "Scanning soft x-ray microscopy", in P. B. Kenway, P. J. Duke, G. W. Lorimer, T. Mulvey, I. W. Drummond, G. Love, A. G. Michette and M. Stedman (eds.), X-Ray Optics and Microanalysis 1992, IOP Publishing, Bristol, 571-577, (1992).

76. C. Jacobsen and S. Williams, "X-ray microscopy and holography with third generation sources", in J. Arthur (ed.), Optics for High-Brightness Synchrotron Radiation Beamlines 1740, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 108-116, (1992).

77. H. N. Chapman, K. A. Nugent, S. W. Wilkins and A. V. Rode, "Capillary x-ray optics", in C. Jacobsen and J. Trebes (eds.), Soft X-ray Microscopy 1741, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 40-50, (1992).

78. C. Jacobsen, S. Lindaas, V. Oehler, S. P. Williams, S. Wirick, X. Zhang, S. Guo and I. Spector, "Experiments in scanning luminescence x-ray microscopy", in C. Jacobsen and J. Trebes (eds.), Soft X-ray Microscopy 1741, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 223-231, (1992).

79. C.-H. Ko, H. Ade, J. Kirz, S. L. Hulbert, E. D. Johnson, E. H. Anderson and D. P. Kern, "Design of the second-generation scanning photoemission microscope at the National Synchrotron Light Source", in C. Jacobsen and J. Trebes (eds.), Soft X-ray Microscopy 1741, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 306-311, (1992).

80. S. Lindaas, C. J. Jacobsen, M. R. Howells and K. Frank, "Development of a linear scanning-force microscope for x-ray Gabor hologram readout", in C. Jacobsen and J. Trebes (eds.), Soft X-ray Microscopy 1741, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 213-222, (1992).

81. B. W. Loo, Jr., S. Williams, W. T. Lin, W. H. Love, S. Meizel and S. S. Rothman, "High resolution x-ray stereomicroscopy: true three-dimensional imaging of biological samples", in C. Jacobsen and J. Trebes (eds.), Soft X-ray Microscopy 1741, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 392-396, (1992).

82. I. McNulty, J. E. Trebes, J. M. Brase, T. J. Yorkey, R. Levesque, H. Szoke, E. H. Anderson, C. Jacobsen and D. Kern, "Experimental demonstration of high resolution three-dimensional x-ray holography", in C. Jacobsen and J. Trebes (eds.), Soft X-ray Microscopy 1741, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 78-84, (1992).

83. S. P. Williams, C. J. Jacobsen, J. Kirz, X. Zhang, J. van't Hof and S. Lamm, "Radiation damage to chromosomes in the scanning transmission x-ray microscope", in C. Jacobsen and J. Trebes (eds.), Soft X-ray Microscopy 1741, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 318-324, (1992).

84. X. Zhang, C. Jacobsen and S. Williams, "Image enhancement through deconvolution", in C. Jacobsen and J. Trebes (eds.), Soft X-ray Microscopy 1741, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 251-259, (1992).

85. H. Ade, J. Kirz, S. Hulbert, E. Johnson, E. Anderson and D. Kern, "Recent Developments in Spectromicroscopy with the X1-SPEM", in A. G. Michette, G. R. Morrison and C. J. Buckley (eds.), X-ray Microscopy III 67, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 226-230, (1992).

86. J. R. Gilbert, J. Pine, J. Kirz, C. Jacobsen, S. Williams, C. J. Buckley and H. Rarback, "Soft x-ray absorption imaging of whole wet tissue culture cells", in A. G. Michette, G. R. Morrison and C. J. Buckley (eds.), X-ray Microscopy III 67, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 388-391, (1992).

87. C. Jacobsen, S. Lindaas and M. Howells, "X-ray holography using photoresists: high resolution lensless imaging", in A. G. Michette, G. R. Morrison and C. J. Buckley (eds.), X-ray Microscopy III 67, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 244-250, (1992).

88. C. Jacobsen and S. Lindaas, "Experiments in Zone Plate Replication Using Spatial Frequency Multiplication at X-Ray Wavelengths", in A. G. Michette, G. R. Morrison and C. J. Buckley (eds.), X-ray Microscopy III 67, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 101-103, (1992).

89. S. Lindaas, H. Rarback, H. Ade, C. Buckley, S. Hellman, M. Howells, C. Jacobsen, J. Kirz, I. McNulty, M. Oversluizen, D. Shu and S. Williams, "Coherent Radiation for X-Ray Imaging: the performance of the X1A Beamline at the NSLS", in A. G. Michette, G. R. Morrison and C. J. Buckley (eds.), X-ray Microscopy III 67, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 34-38, (1992).

90. I. McNulty, J. Kirz, C. Jacobsen, M. R. Howells and E. Anderson, "First results with a Fourier transform holographic microscope", in A. G. Michette, G. R. Morrison and C. J. Buckley (eds.), X-ray Microscopy III 67, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 251-254, (1992).

91. S. S. Rothman, K. K. Goncz and B. Loo, Jr., "Following protein transport with the high resolution x-ray microscope", in A. G. Michette, G. R. Morrison and C. J. Buckley (eds.), X-ray Microscopy III 67, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 373-383, (1992).

92. S. Williams, C. Jacobsen, J. Kirz, S. S. Lamm and J. van't Hof, "Scanning transmission x-ray microscopy of hydrated mitotic chromosomes", in A. G. Michette, G. R. Morrison and C. J. Buckley (eds.), X-ray Microscopy III 67, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 408-412, (1992).

93. J. Pine and J. Gilbert, "Live cell specimens for x-ray microscopy", in A. G. Michette, G. R. Morrison and C. J. Buckley (eds.), X-ray Microscopy III 67, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 384-387, (1992). [ PDF]

94. C. Jacobsen, "Making soft x-ray microscopy harder: considerations for sub-0.1 µm resolution imaging at ~4 Å wavelengths", in A. G. Michette, G. R. Morrison and C. J. Buckley (eds.), X-ray Microscopy III 67, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 274-277, (1992). [ PDF]



1991

95. J. Kirz, "X-ray microscopy", Synchrotron Radiation News 4 (2), 17-22, (Mar. 1991).

96. C. Jacobsen, S. Lindaas and M. Howells, "X-Ray Holographic Microscopy Using Photoresists: Recent Developments", in P. H. Bucksbaum and N. M. Ceglio (eds.), OSA Proceedings on Short Wavelength Coherent Radiation: Generation and Applications 11, Optical Society of America, Washington, D. C., 130-134, (1991).



1990

97. J. Kirz, H. Ade, E. Anderson, D. Attwood, C. Buckley, S. Hellman, M. Howells, C. Jacobsen, D. Kern, S. Lindaas, I. McNulty, M. Oversluizen, H. Rarback, M. Rivers, S. Rothman, D. Sayre and D. Shu, "X-ray microscopy with the NSLS soft x-ray undulator", Physica Scripta T 31, 12-17, (1990).

98. S. Rothman, E. Anderson, D. Attwood, P. Batson, C. Buckley, K. Goncz, M. Howells, C. Jacobsen, D. Kern, J. Kirz, H. Rarback, M. Rivers, D. Shu, R. Tackaberry and S. Turek, "Soft x-ray microscopy in biology and medicine: status and prospects", Physica Scripta T 31, 18-22, (1990).

99. M. R. Howells and C. Jacobsen, "X-ray Holography", Synchrotron Radiation News 3 (4), 23-28, (July 1990).

100. M. R. Howells, C. Jacobsen, J. Kirz, K. McQuaid and S. S. Rothman, "Progress and prospects in soft x-ray holographic microscopy", in P. J. Duke and A. G. Michette (eds.), Modern Microscopies, Plenum Press, New York, 119-132, (1990).

101. C. Jacobsen, "X-ray microscopy: undulators today, FEL's tomorrow?", Tech. Report BNL 52273, Brookhaven National Laboratory, Upton, New York, (1990), Proceedings of the Workshop on Prospects for a 1 Å Free-Electron Laser (J. C. Gallardo ed.).

102. C. Jacobsen, "X-ray holography: a history", in K. Shinohara, K. Yada, H. Kihara and T. Saito (eds.), X-ray Microscopy in Biology and Medicine, Springer-Verlag, Berlin, 167-177, (1990), Also Japan Scientific Societies Press, Tokyo.



1989

103. C. Jacobsen, J. Kirz, M. R. Howells and S. Rothman, "Biological microscopy via x-ray holography", European Journal of Cell Biology 48 (Supp. 25), 177-182, (1989).



1988

104. C. Jacobsen, J. Kirz, D. DiGennaro, M. Howells and S. Rothman, "The potential of free electron lasers for x-ray holographic microscopy of biological specimens", in Free-Electron Laser Applications in the Ultraviolet 4, Optical Society of America, Technical Digest Series, 133-136, (1988).

105. C. Jacobsen, M. Howells, J. Kirz, K. McQuaid and S. Rothman, "X-ray holographic microscopy: improved images of zymogen granules", in R. W. Falcone and J. Kirz (eds.), OSA Proceedings on Short Wavelength Coherent Radiation: Generation and Applications 2, Optical Society of America, Washington, D. C., 303-308, (1988).

106. S.-F. Fan, H. Rarback, H. Ade and J. Kirz, "Exploration of the Demyelinated Axon of the Medullated Shrimp Giant Nerve by Soft X-ray Microscopy", in D. Sayre, M. R. Howells, J. Kirz and H. Rarback (eds.), X-ray Microscopy II 56, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 399-402, (1988).

107. C. Jacobsen, J. Kirz, M. Howells, R. Feder, D. Sayre, K. McQuaid and S. Rothman, "Progress in high resolution x-ray holographic microscopy", in D. Sayre, M. R. Howells, J. Kirz and H. Rarback (eds.), X-ray Microscopy II 56, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 253-262, (1988).

108. H. Rarback, D. Shu, S. C. Feng, H. Ade, C. Jacobsen, J. Kirz, I. McNulty, Y. Vladimirsky, D. P. Kern and T. H. P. Chang, "The Stony Brook—NSLS scanning microscope", in D. Sayre, M. R. Howells, J. Kirz and H. Rarback (eds.), X-ray Microscopy II 56, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 194-200, (1988).

109. D. Sayre, W. Yun and J. Kirz, "Experimental Observation of Diffraction Patterns from Microspecimens", in D. Sayre, M. R. Howells, J. Kirz and H. Rarback (eds.), X-ray Microscopy II 56, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 272-275, (1988).

110. W.-B. Yun and M. R. Howells, "Experimental demonstration of producing high resolution zone plates by spatial-frequency multiplication", in D. Sayre, M. R. Howells, J. Kirz and H. Rarback (eds.), X-ray Microscopy II 56, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 182-185, (1988).



1986

111. H. Rarback, D. Shu, H. Ade, C. Jacobsen, J. Kirz, I. McNulty and R. Rosser, "An undulator based scanning microscope at the National Synchrotron Light Source", in L. V. Knight and D. K. Bowen (eds.), X-ray Imaging II 691, Society of Photo-Optical Instrumentation Engineers (SPIE), 107-110, (1986).

112. C. Jacobsen, J. Kirz, I. McNulty, R. Rosser, C. Buckley, R. Burge, M. Browne, R. Cave, P. Charalambous, P. Duke, J. Kenney, A. Michette, G. Morrison, F. Cinotti, H. Rarback and J. Pine, "Scanning soft x-ray microscopy at the National Synchrotron Light Source", in D. T. Attwood and J. Bokor (eds.), Short Wavelength Coherent Radiation: Generation and Applications 147, Optical Science and Engineering Series, American Institute of Physics, New York, 57-63, (1986).



1985

113. M. R. Howells, J. Kirz and D. Sayre, "Proposal for a 4.1 keV Submicron Microprobe at the 6 GeV Ring", in K. O. Hodgson and J. B. Cohen (eds.), Report of the Workshop on the Scientific Case for a 6 GeV Synchrotron Source, Argonne National Laboratory, Argonne ILL, (1985), II-29-31.

114. M. R. Howells, M. Iarocci, J. Kenney, H. Rarback, R. Rosser and W. Yun, "Applications of holography to x-ray imaging", in L. Huff (ed.), Applications of Holography 523, Society of Photo-Optical Instrumentation Engineers (SPIE), 347-354, (1985).

115. C. Jacobsen and H. Rarback, "Predictions on the performance of the Soft X-Ray Undulator", in R. Tatchyn and I. Lindau (eds.), International Conference on Insertion Devices for Synchrotron Sources 582, Proceedings of SPIE, The International Society for Optical Engineering, 201-212, (1985). [ PDF]



1984

116. H. Rarback, J. M. Kenney, J. Kirz, M. R. Howells, P. Chang, P. J. Coane, R. Feder, P. J. Houzego, D. P. Kern and D. Sayre, "Recent results from the Stony Brook scanning microscope", in G. Schmahl and D. Rudolph (eds.), X-ray Microscopy 43, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 203-215, (1984).

117. D. Sayre, R. P. Haelbich, J. Kirz and W. Yun, "On the Possibility of Imaging Microstructures by Soft X-ray Diffraction Pattern Analysis", in G. Schmahl and D. Rudolph (eds.), X-ray Microscopy 43, Springer-Verlag, Springer Series in Optical Sciences, Berlin, 314-316, (1984).



1983

118. M. R. Howells and J. Kirz, "Coherent soft x-rays in high resolution imaging", in J. M. J. Madey and C. Pellegrini (eds.), Free Electron Generation of Extreme Ultraviolet Coherent Radiation 118, American Institute of Physics, New York, 85-95, (1983).



1980

119. J. Kirz, "Specimen damage considerations in biological microprobe analysis", in Scanning Electron Microscopy 2, SEM Inc., Chicago, 239-249, (1980). [ PDF]

120. J. Kirz and D. Sayre, "Soft x-ray microscopy of biological specimens", in H. Winick and S. Doniach (eds.), Synchrotron Radiation Research, Plenum Press, New York, 277-322, (1980).

121. H. Rarback, J. Kenney, J. Kirz and X. S. Xie, "Scanning X-ray Microscopy—First Tests with Synchrotron Radiation", in E. A. Ash (ed.), Scanned Image Microscopy, Academic Press, London, 449-456, (1980). [ PDF]

122. J. Kirz, "Mapping the distribution of particular atomic species", in D. F. Parsons (ed.), Ultrasoft X-ray Microscopy: Its Application to Biological and Physical Sciences 342, Annals of the New York Academy of Sciences, New York, 273-287, (1980). [ PDF]



1978

123. J. Kirz, D. Sayre and J. Dilger, "Comparative analysis of x-ray emission microscopies for biological specimens", in D. F. Parsons (ed.), Short Wavelength Microscopy 306, Annals of the New York Academy of Sciences, New York, 291-305, (1978). [ PDF]

Dissertations

Stony Brook

1. H. Fleckenstein, "High Resolution Chemical Mapping via Scanning Transmission X-ray Microscopy", Ph.D. thesis, Department of Physics and Astronomy, Stony Brook University, 2008. [ PDF]

2. B. Larson, "X-ray Spectromicroscopy Analysis and Its Applications to Bacterial Interactions in the Environment", Ph.D. thesis, Department of Physics and Astronomy, Stony Brook University, 2008. [ PDF]

3. H. Miao, "Studies on X-ray Diffraction Microscopy", Ph.D. thesis, Department of Physics and Astronomy, Stony Brook University, 2008. [ PDF]

4. B. Hornberger, "Phase Contrast Microscopy with Soft and Hard X-rays Using a Segmented Detector", Ph.D. thesis, Department of Physics and Astronomy, Stony Brook University, 2007. [ PDF]

5. M. Lu, "Nanofabrication of Fresnel zone plates for soft X-ray imaging at carbon edge", Ph.D. thesis, Department of Physics and Astronomy, Stony Brook University, 2006. [ PDF]

6. E. Lima, "The Advancement of Biological Imaging Through X-ray Diffraction Microscopy", Ph.D. thesis, Department of Physics and Astronomy, Stony Brook University, 2006. [ PDF]

7. M. Lerotić, "Finding the patterns in complex specimens by improving the acquisition and analysis of x-ray spectromicroscopy data", Ph.D. thesis, Department of Physics and Astronomy, Stony Brook University, 2005. [ PDF]

8. T. Beetz, "Soft x-ray diffraction imaging with and without lenses and radiation damage studies", Ph.D. thesis, Department of Physics and Astronomy, Stony Brook University, 2004. [ PDF]

9. D. Shapiro, "Biological imaging by soft x-ray diffraction microscopy", Ph.D. thesis, Department of Physics and Astronomy, Stony Brook University, 2004. [ PDF]

10. A. G. Stein, "Focusing optics for soft and hard x-rays: fabrication, replication and simulations", Ph.D. thesis, Department of Physics and Astronomy, Stony Brook University, 2002. [ PDF]

11. M. Feser, "Scanning transmission x-ray microscopy with a segmented detector", Ph.D. thesis, Department of Physics and Astronomy, Stony Brook University, 2002. [ PDF]

12. A. Osanna, "Soft x-ray spectromicroscopy in a cryo scanning transmission x-ray microscope", Ph.D. thesis, Department of Physics and Astronomy, State University of New York at Stony Brook, 2000. [ PDF]

13. B. L. Winn, "Tomography with a cryogenic scanning transmission x-ray microscope", Ph.D. thesis, Department of Physics and Astronomy, State University of New York at Stony Brook, 2000. [ PDF]

14. J. Miao, "Extending the Methodology of X-ray Crystallography to Non-Crystalline Specimens", Ph.D. thesis, Department of Physics and Astronomy, Stony Brook University, 1999. [ PDF]

15. U. Neuhäusler, "Soft x-ray spectromicroscopy on hydrated colloidal and environmental science samples", Ph.D. thesis, Georg-August-Universität zu Göttingen, 1999, (Work done in residence at Stony Brook). [ PDF]

16. Y. Wang, "Three-dimensional imaging in soft x-ray microscopy", Ph.D. thesis, Department of Physics and Astronomy, State University of New York at Stony Brook, 1998. [ PDF]

17. S. J. Spector, "Diffractive optics for soft x rays", Ph.D. thesis, Department of Physics, State University of New York at Stony Brook, 1997. [ PDF]

18. C.-H. Ko, "Development of a second generation scanning photoemission microscope at the National Synchrotron Light Source", Ph.D. thesis, Department of Physics, State University of New York at Stony Brook, 1995.

19. X. Zhang, "Development and applications of quantitative x-ray microscopy with chemical sensitivity", Ph.D. thesis, Department of Physics, State University of New York at Stony Brook, 1995.

20. S. A. Lindaas, "X-ray Gabor holography using a scanning force microscope", Ph.D. thesis, Department of Physics, State University of New York at Stony Brook, 1994. [ PDF]

21. I.L. McNulty, "X-ray Fourier transform holography: beyond the optical diffraction limit", Ph.D. thesis, Department of Physics, State University of New York at Stony Brook, 1991. [ PDF]

22. H. Ade, "Development of a scanning photoemission microscope", Ph.D. thesis, Department of Physics, State University of New York at Stony Brook, 1990.

23. C. Jacobsen, "X-ray holographic microscopy of biological specimens using an undulator", Ph.D. thesis, Department of Physics, State University of New York at Stony Brook, 1988. [ PDF]

24. W.-B. Yun, "Contributions to soft x-ray diffraction imaging and diffractive optics", Ph.D. thesis, Department of Physics, State University of New York at Stony Brook, 1987.

25. B.-X. Yang, "Oxygen K-edge EXAFS studies of gases and liquids", Ph.D. thesis, Department of Physics, State University of New York at Stony Brook, 1985.

26. J. M. Kenney, "Elemental analysis using a scanning transmission X-ray microscope— Mapping calcium concentration in human bone", Ph.D. thesis, Department of Physics, State University of New York at Stony Brook, 1984.

27. H. M. Rarback, "The development of a scanning soft x-ray microscope", Ph.D. thesis, Department of Physics, State University of New York at Stony Brook, 1983.



Users of U-15

28. C. J. Buckley, "The Fabrication of Gold Zone Plates and their use in Scanning X-ray Microscopy", Ph.D. thesis, Department of Physics, King's College, London, 1987.



Users of X-1A

29. B. T. De Gregorio, "Structure, Bonding, and Composition of Carbonaceous Material in Precambrian Cherts", Ph.D. thesis, Arizona State University, 2006. [ PDF]

30. C. K. Boyce, "Leaves, Lignin, and the Evolution of Novel Organ and Cell Types in Early Land Plants", Ph.D. thesis, Harvard University, Cambridge, 2001.

31. A. P. Smith, "Solid-state blending and compatibilization of polymers by cryogenic mechanical alloying", Ph.D. thesis, Department of Materials Science and Engineering, North Carolina State University, 1999.

32. K. K. Goncz, "A comprehensive study of the physical properties of isolated zymogen granules using scanning transmission x-ray microscopy", Ph.D. thesis, Department of Biophysics, University of California, 1994.

33. J. R. Gilbert, "Soft x-ray microimaging of whole wet cells", Ph.D. thesis, California Institute of Technology, 1992. [ PDF]

Master's Theses

Stony Brook

1. S. Moser, "A New Combined Detection System for STXM and the Applicability of (CdSe)ZnS Nanocrystals to SLXM", M.A. thesis, Department of Physics and Astronomy, Stony Brook University, 2008. [ PDF]

2. J. Steinbrener, "Scanning luminescence x-ray microscopy exploring the use of quantum dot nanocrystals as high spatial resolution biological labels", M.A. thesis, Department of Physics and Astronomy, Stony Brook University, 2006. [ PDF]

3. M. Häming, "Spectroscopy on Poly-L-Lysine and Spectromicroscopy Study on Biomineralized Proteins in Jaws of Glycera Dibranchiata", M.A. thesis, Department of Physics and Astronomy, Stony Brook University, 2005. [ PDF]

4. M. Carlucci Dayton, "Nomarski differential phase contrast using a scanning transmission x-ray microscope", M.S.I. thesis, Department of Physics and Astronomy, State University of New York at Stony Brook, 2000. [ PDF]

5. S. Vogt, "Dark field x-ray microscopy: theoretical calculations and biological cell labeling", M.A. thesis, Department of Physics and Astronomy, State University of New York at Stony Brook, 1997. [ PDF]

6. J. M. Boese, "X-ray absorption near edge structure of amino acids and peptides", M.A. thesis, Department of Physics, State University of New York at Stony Brook, 1996. [ PDF]

7. K. Maier, "Characterisation of a scanning photoemission microscope", M.A. thesis, Department of Physics, State University of New York at Stony Brook, 1995.



Users of X-1A

8. A. P. Smith, "Characterization of the lateral orientation within poly(p-phenyleneterephthalamide) (Kevlar) fibers and the microchemistry of methylenediphenyl diisocyanate (MDI) based polyurethane foams with x-raymicroscopy", M.S. thesis, Materials Science and Engineering, North Carolina State University, 1995.

Publications from other groups using the X-1A beamlines

2007

1. J. Lehmann, J. Kinyangi and D. Solomon, "Organic matter stabilization in soil microaggregates: implications from spatial heterogeneity of organic carbon contents and carbon forms", Biogeochemistry, (2007). [ PDF]

2. J. Rothe, M. Plaschke and M. Denecke, "Understanding Humic Acid / Zr(IV) Interaction - A Spectromicroscopy Approach", X-ray Absorption Fine Structure - XAFS13 CP882, 193-195, (2007). [ PDF]

3. I. Christl and R. Kretzschmar, "C-1s NEXAFS Spectroscopy Reveals Chemical Fractionation of Humic Acid by Cation-Induced Coagulation", Environmental Science and Technology 41, 1915-1920, (2007). [ PDF]

4. I. Baldea, B. Schimmelpfennig, M. Plaschke, J. Rothe, J. Schirmer, A. Trofimov and T Fanghänel, "C 1s Near Edge X-ray Absorption Fine Structure (NEXAFS) of substituted benzoic acids - a theoretical and experimental study", Journal of Electron Spectroscopy and Related Phenomena 154, 109-118, (2007). [ PDF]

5. D. Solomon, J. Lehmann, J. Kinyangi, W. Amelung, I. Lobe, S. Ngoze, S. Riha, A. Pell, L. Verchot, D. Mbugua, J. Skjemstad and T. Schäfer, "Long-term impacts of anthropogenic perturbations on the dynamics and molecular speciation of organic carbon in tropical forest and subtropical grassland ecosystems", Global Change Biology 13, 511-530, (2007). [ PDF]



2006

6. A. Naber, M. Plaschke, J. Rothe, H. Hofmann and T. Fanghänel, "Scanning Transmission X-ray and Laser Scanning Luminescence Microscopy of the Carboxyl Group and Eu(III) Distribution in Humic Acid Aggregates", Journal of Electron Spectroscopy and Related Phenomena 153, 71-74, (2006). [ PDF]



2005

7. A. Bauer, T. Rabung, F. Claret, T. Schäfer, G. Buckau and T. Fanghänel, "Influence of temperature on sorption of europium onto smectite: the role of organic contaminants", Applied Clay Science 30, 1-10, (2005).

8. F. Claret, T. Schäfer, T. Rabung, M. Wolf, A. Bauer and G. Buckau, "Differences in properties and Cm(III) complexation behavior of isolated humic and fulvic acid derived from Opalinus clay and Callovo-Oxfordianargillite", Applied Geochemistry 20, 1158-1168, (2005).

9. R. Kretzschmar and T. Schäfer, "Metal retention and transport on colloidal particles in the environment", Elements 1, 205-210, (2005).

10. M. Plaschke, J. Rothe, M. Altmaier, M. Denecke and T. Fanghänel, "Near Edge X-ray Absorption Fine Structure (NEXAFS) of model compounds for the humic acid / actinide ion interaction", Journal of Electron Spectroscopy and Related Phenomena 148, 151-157, (2005). [ PDF]

11. D. Solomon, J. Lehmann, J. Kinyangi, B. Liang and T. Schäfer, "Carbon K-Edge NEXAFS and FTIR-ATR Spectroscopic Investigation of Organic Carbon Speciation in Soils", Soil Science Society of America Journal 69, 107-119, (2005). [ PDF]



2004

12. M. Plaschke, J. Rothe and M. A. Denecke, "Characterization of Gorleben groundwater colloids by scanning transmission X-ray microscopy", Progress in Colloid and Polymer Science 126, 130-133, (2004).

13. J. Rothe, M. Plaschke and M. A. Denecke, "Scanning transmission x-ray microscopy as a speciation tool for natural organic molecules", Radiochimica Acta 92, 711-714, (2004).

14. H. Geckeis, T. Schäfer, W. Hauser, T. Rabung, T. Missana, C. Degueldre, A. Möri, J. Eikenberg, T. Fierz and W. Alexander, "Results of the Colloid and Radionuclide Retention Experiment (CRR) at the Grimsel Test Site (GTS), Switzerland - Impact of Reaction Kinetics and Speciation on Radionuclide Migration", Radiochimica Acta 92, 765-774, (2004).

15. M. Plaschke, J. Rothe, M. Denecke and T. Fanghänel, "Soft x-ray spectromicroscopy of humic acid europium(III) complexation by comparison to model substances", Journal of Electron Spectroscopy and Related Phenomena 135, 53-62, (2004). [ PDF]



2003

16. D.A. Winesett, S. Story, J. Luning and H. Ade, "Tuning Substrate Surface Energies for Blends of Polystyrene and Poly(methylmethacrylate)", Langmuir 19, 8526-8535, (2003).

17. C.K. Boyce, G.D. Cody, M.L. Fogel, R.M. Hazen, C. Alexander and A.H. Knoll, "Chemical evidence for cell wall lignification and the evolution of tracheids in early Devonian plants", International Journal of Plant Science 164 (5), 691-702, (2003).

18. O. Dhez, H. Ade and S.G. Urquhart, "Calibrated NEXAFS spectra of some common polymers", Journal of Electron Spectroscopy and Related Phenomena 128 (1), 85-96, (2003).

19. J. Rothe, M. Plaschke and M.A. Denecke, "Soft X-ray spectro-microscopy investigation of the formation and ageing of Eu(III)-induced humicacid aggregates", Journal de Physique IV 104, 421-424, (2003). [ PDF]

20. D.A. Winesett, H. Ade, A.P. Smith, S.G. Urquhart, A.J. Dias, A.J. and P. Stevens, "Application of Scanning Transmission X-ray Microscopy to the Rubber Industry", Rubber Chemistry and Technology 76 (4), 803-811, (2003).

21. T. Schäfer, F. Claret, A. Bauer, L. Griffault, E. Ferrage and B. Lanson, "Natural organic matter (NOM)-clay association and impact on Callovo-Oxfordian clay stability in high alkaline solution: spectromicroscopic evidence", Journal de Physique IV 104, 413-416, (2003). [ PDF]

22. T. Schäfer, N. Hertkorn, R. Artinger, F. Claret and A. Bauer, "Functional group analysis of natural organic colloids and clay association kinetics using C(1s) spectromicroscopy", Journal de Physique IV 104, 409-412, (2003). [ PDF]



2002

23. T. Coffey, S. Urquhart and H. Ade, "Characterization of the Effects of Soft X-ray Irradiation on Polymers", Journal of Electron Spectroscopy and Related Phenomena 122, 65-78, (2002).

24. G. Mitchell, L. Wilson, M. Dineen, S. Urquhart, F. Hayes, E. Rightor, P. Hitchcock and and H. Ade, "Quantitative Characterization of Microscopic Variations in the Cross-Link Density of Gels", Macromolecules 35, 1336-1341, (2002).

25. E. G. Rightor, S. G. Urquhart, A. P. Hitchcock, H. Ade, A. P. Smith, G. E. Mitchell, R. D. Priester, A. Aneja, G. Appel, G. Wilkes and W. E. Lidy, "Identification and quantitation of urea participates in flexible polyurethane foam formulations by x-ray spectromicroscopy", Macromolecules 35, 5873-5882, (2002).

26. S. Urquhart and H. Ade, "Trends in the Carbonyl Core Transition in the Near Edge X-ray Absorption Fine Structure Spectra of Organic Molecules", Journal of Physical Chemistry B 106, 8531-8538, (2002). [ PDF]

27. M. Plaschke, J. Rothe, T. Schäfer, M. Denecke, K. Dardenne, S. Pompe and K.-H. Heise, "Combined AFM and STXM in situ study of the influence of Eu(III) on the agglomeration of humic acid", Colloids and Surfaces A: Physiochemical and Engineering Aspects 197, 245-256, (2002).

28. F. Claret, A. Bauer, T. Schäfer, L. Griffault and B. Lanson, "Experimental investigation of the interaction of clays with high-pH solutions: a case study from the Callovo-Oxfordian formation, Meuse-Haute Marne Underground Laboratory (France)", Clays and Clay Minerals 50 (5), 633-646, (2002). [ PDF]



2001

29. A. P. Hitchcock, I. Koprinarov, T. Tyliszczak, E.G. Rightor, G. E. Mitchell, M. T. Dineen, F. Hayes, W. Lidy, R. D. Priester, S. G. Urquhart, A. P. Smith and H. Ade, "Optimization of scanning transmission X-ray microscopy for the identification and quantitation of reinforcing particles in polyurethanes", Ultramicroscopy 88, 33-49, (2001).

30. A. P. Smith, H. Ade, S. D. Smith, C. C. Koch and R. J. Spontak, "Anomalous phase inversion in polymer blends prepared by cryogenic mechanical alloying", Macromolecules 34, 1536-1538, (2001).

31. A. P. Smith, H. Ade, C. C. Koch and R. J. Spontak, "Cryogenic mechanical alloying as an alternative stragetgy for there cycling of tires", Polymer 42, 4453-4457, (2001).

32. A. Smith, S. Urquhart, D. Winesett, G. Mitchell and H. Ade, "Use of near edge X-ray absorption fine structure spectromicroscopy to characterize multicomponent polymeric systems", Applied Spectroscopy 55, 1676-1681, (2001).

33. Y. Zhang, S. Ge, B. Tang, T. Koga, M. Rafailovich, J. Sokolov, D. Peiffer, Z. Li and A. Dias et al., "Effect of carbon black and silica fillers in elastomer blends", Macromolecules 34, 7056-7065, (2001).

34. H. Ade and S. G. Urquhart, "NEXAFS spectroscopy and microscopy of natural and synthetic polymers", in T. K. Sham (ed.), Chemical Applications of Synchrotron Radiation, World Scientific Publishing, Singapore, (2001).



2000

35. A. P. Smith, H. Ade, C. C. Koch, S. D. Smith and R. J. Spontak, "Addition of a block copolymer to polymer blends produced by cryogenic mechanical alloying", Macromolecules 33, 1163-1172, (2000).

36. D. A. Winesett, S. Zhu, J. Sokolov, M. Rafailovich and H. Ade, "Time-temperature superposition of phase separating polymer blendfilms", High Performance Polymers 12, 599-602, (2000).

37. J. Rothe, M.A. Denecke and K. Dardenne, "Soft X-Ray Spectromicroscopy Investigation of the Interaction of Aquatic Humic Acid and Clay Colloids", Journal of Colloid Interface Science 231 (1), 91-97, (2000).

38. D. Slep, J. Asselta, M. H. Rafailovich, J. Sokolov, D. A. Winesett, A. P. Smith, H. Ade and S. Anders, "The effect of an interactive surface on the equilibrium contact angle in bilayer polymer films", Langmuir 16 (5), 2369-2375, (2000).

39. A. P. Smith, R.J. Spontak, C.M. Balik, C.C. Koch, S.D. Smith and H. Ade, "High-energy mechanical alloying of poly(methyl methacrylate) with polyisoprene or poly(ethylene-alt-propylene) at cryogenic temperatures", Macromolecular Materials and Engineering 274 (1), 1-12, (2000).

40. A. P. Smith, H. Ade, C. M. Balik, C. C. Koch, S. D. Smith and R. J. Spontak, "Cryogenic mechanical alloying of poly(methyl methacrylate) with polyisoprene and poly(ethylene-alt-propylene)", Macromolecules 33 (7), 2595-2604, (2000).

41. A. P. Smith, J. S. Shay, R.J. Spontak, C.M. Balik, H. Ade, S.D. Smith and C.C. Koch, "High-energy mechanical milling of poly(methyl methacrylate), polyisoprene and poly(ethylene-alt-propylene)", Polymer 41 (16), 6271-6283, (2000).

42. D. A. Winesett, H. Ade, J. Sokolov, M. Rafailovich and S. Zhu, "Substrate dependence of morphology in thin film polymer blends", Polymer International 49 (5), 458-462, (2000).



1999

43. H. Ade, D. A. Winesett, A. P. Smith, S. Qu, S. Ge, S. Rafailovich and J. Sokolov, "Phase segregation in polymer thin films: elucidations by x-ray and scanning force microscopy", Europhysics Letters 45, 526-532, (1999).

44. M. M. Moronne, "Development of X-ray excitable luminescent probes for scanning X-ray microscopy", Ultramicroscopy 77, 23-36, (1999).

45. A. P. Smith, R.J. Spontak, H. Ade, S.D. Smith and C.C. Koch, "High-energy cryogenic blending and compatibilization of immiscible polymers", Advanced Materials 11, 1277-1281, (1999).

46. S.G. Urquhart, A.P. Hitchcock, A.P. Smith, H.W. Ade, B. Lessard, W. Lidy, E.G. Rightor and G.E. Mitchell, "NEXAFS spectromicroscopy of polymers: overview and quantitative analysis of polyurethane polymers", Journal of Electron Spectroscopy and Related Phenomena 100, 119-135, (1999).

47. S.G. Urquhart, A.P. Smith, H. Ade, A.P. Hitchcock, E.G. Rightor and W. Lidy, "Near-edge x-ray absorption fine structure spectroscopy of MDI and TDI polyurethane polymers", Journal of Physical Chemistry B 103, 4603-4610, (1999).

48. S. Zhu, Y. Liu, M. H. Rafailovich, J. Sokolov, D. Gersappe, A. Winesett and H. Ade, "Confinement-induced miscibility in polymer blends", Nature 400, 49-51, (1999).

49. R. Giebler, B. Schulz, J. Reiche, L. Brehmer, M. Wühn, C. Wöll, A. Smith, S. Urquhart, H. Ade and W. Unger, "NEXAFS-spectrosopy on ordered films of amphiphilic derivatives of 2,5-diphenyl-1,3,4-oxadiazoles", Langmuir 15, 1291-1298, (1999).



1998

50. D. Slep, J. Asselta, M.H. Rafailovich, J. Sokolov, D.A. Winesett, A.P. Smith, H. Ade, Y. Strzhemechny, S.A. Schwarz and B.B. Sauer, "The phase separation of polystyrene and bromo-polystyrene mixtures in equilibrium structures in thin films", Langmuir 14, 4860-4864, (1998).

51. A. P. Smith, C. Bai, H. Ade, R.J. Spontak, C.M. Balik and C.C. Koch, "X-ray microscopy of novel thermoplastic/liquid crystalline polymer blends by mechanical alloying", Macromolecules Rapid Communications 19, 557-561, (1998).

52. H. Ade, D. A. Winesett, A. P. Smith, S. Anders, T. Stammler, C. Heske, D. Slep, M. H. Rafailovich, J. Sokolov and J. Stöhr, "Bulk and surface characterization of a dewetting thin film polymer bilayer", Applied Physics Letters 73, 3775-3777, (1998).

53. C. Buckley, N. Khaleque, S. J. Bellamy, M. Robbins and X. Zhang, "Mapping the organic and inorganic components of bone", in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, II-47-55, (1998).

54. F. Polack, D. Joyeux and D. Phalippou, "Phase contrast experiments on the NSLS-X1A scanning microscope", in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, I-105-109, (1998).

55. H. Ade, "NEXAFS and x-ray linear dichroism microscopy and applications to polymer science", in J. Thieme, G. Schmahl, E. Umbach and D. Rudolph (eds.), X-ray Microscopy and Spectromicroscopy, Springer-Verlag, Berlin, III-3-14, (1998).

56. H. Ade, "X-ray spectromicroscopy", in R. Celotta and T. Lucatorto (eds.), Experimental Methods in the Physical Sciences 32, Academic Press, New York, 225-262, (1998).



1997

57. H. Ade, A. P. Smith, H. Zhang, G. R. Zhuang, J. Kirz, E. Rightor and A. Hitchcock, "X-ray spectroscopy of polymers and tribological surfaces at beamline X-1A at the NSLS", Journal of Electron Spectroscopy and Related Phenomena 84, 53-72, (1997).

58. A. P. Smith, J. H. Laurer, H. W. Ade, S. D. Smith, A. Ashraf and R. J. Spontak, "X-ray microscopy and NEXAFS spectroscopy of macrophase-separated random block copolymer/homopolymer blends", Macromolecules 30, 663-666, (1997).

59. S. G. Urquhart, A. P. Hitchcock, A. P. Smith, H. Ade and E. G. Rightor, "Inner-shell excitation spectroscopy of polymer and monomer isomers of dimethyl phthalate", Journal of Physical Chemistry B 101, 2267-2276, (1997).

60. H. Ade, "Compositional and orientational characterization of polymeric systems with x-ray microscopy", Trends in Polymer Science 5 (2), 58-66, (1997).

61. C. J. Buckley, N. Khaleque, S. J. Bellamy, M. Robins and X. Zhang, "Mapping the organic and inorganic components of tissue using NEXAFS", Journal de Physique IV 7 (C2 Part 1), 83-90, (1997).

62. E. G. Rightor, A. P. Hitchcock, H. Ade, R. D. Leapman, S. G. Urquhart, A. P. Smith, G. Mitchell, D. Fischer, H. J. Shin and T. Warwick, "Spectromicroscopy of poly(ethylene terephthalate): comparison of spectra and radiation damage rates in x-ray absorption and electron energy loss", Journal of Physical Chemistry B 101 (11), 1950-1960, (1997).



1996

63. G. D. Cody, R. E. Botto, H. Ade and S. Wirick, "The application of soft x-ray microscopy to the in-situ analysis of sporinite in coal", International Journal of Coal Geology 32, 69-86, (1996).

64. K. K. Goncz and S. S. Rothman, "Membrane protein transport in eukaryotic secretion in cells", Membrane Protein Transport 3, 279-293, (1996).

65. A. P. Smith and H. Ade, "Quantitative orientational analysis of a polymeric material (Kevlar-R fibers) with x-ray microspectroscopy", Applied Physics Letters 69, 3833-3835, (1996).



1995

66. H. Ade, B. Hsiao, G. Mitchell, E. Rightor, A. P. Smith and R. Cieslinski, "X-ray microscopy of polymeric materials", Proceedings of the Material Research Society 375, 293-302, (1995).

67. G. D. Cody, R. E. Botto, H. Ade, S. Behal, M. Disko and S. Wirick, "C-NEXAFS microanalysis and scanning x-ray microscopy of microheterogeneities in a high-volatile A bituminous coal", Energy and Fuels 9, 75-83, (1995).

68. K. K. Goncz and S. S. Rothman, "A membrane pore can account for the observed permeability of zymogen granules to their enclosed protein", Biophysical et Biochimical Acta 1238, 91-93, (1995).

69. K. K. Goncz, R. Behrsing and S. S. Rothman, "The morphology and structure of zymogen granules", Cell and Tissue Research 280, 519-530, (1995).

70. C. J. Buckley, S. J. Bellamy, X. Zhang, G. Dermody and S. Hulbert, "The NEXAFS of biological calcium phosphates", Review of Scientific Instruments 66 (2), 1322-1324, (1995).

71. G. D. Cody, R. E. Botto, H. Ade, S. Behal, M. Disko and S. Wirick, "Inner-shell spectroscopy and imaging of a subbituminous coal: in-situ analysis of organic and inorganic microstructure using C(1s), Ca(2p), and Cl(2s)-NEXAFS", Energy and Fuels 9, 525-533, (1995).

72. I. McNulty, W. S. Haddad, J. E. Trebes and E. H. Anderson, "Soft x-ray scanning microtomography with submicrometer resolution", Review of Scientific Instruments 66 (2), 1431-1433, (1995).

73. H. Ade, A. P. Smith, S. Cameron, R. Cieslinski, G. Mitchell, B. Hsiao and E. Rightor, "X-ray microscopy in polymer science: prospects of a "new" imaging technique", Polymer 36 (9), 1843-1848, (1995).

74. C. J. Buckley, "The measuring and mapping of calcium in mineralised tissues by absorption difference imaging", Review of Scientific Instruments 66 (2), 1318-1321, (1995). [ PDF]

75. G. Cody, R. E. Botto, H. Ade and S. Wirick, "Soft x-ray microscopy and microanalysis: applications in organic geochemistry", in W. Yun (ed.), X-ray microbeam technology and applications 2516, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 185-196, (1995).

76. W. S. Haddad, J. E. Trebes, D. M. Goodman, H.-R. Lee, I. McNulty, E. H. Anderson and A. O. Zalensky, "Ultrahigh-resolution soft x-ray tomography", in W. Yun (ed.), X-ray microbeam technology and applications 2516, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 102-107, (1995).



1994

77. R. E. Botto, G. D. Cody, J. Kirz, H. Ade, S. Behal and M. Disko, "Selective Chemical Mapping of Coal Microheterogeneity by Scanning Transmission X-ray Microscopy", Energy and Fuels 8, 151-154, (1994).

78. W. S. Haddad, I. McNulty, J. E. Trebes, E. H. Anderson, R. A. Levesque and L. Yang, "Ultra high resolution x-ray tomography", Science 266, 1213-1215, (1994).

79. M. Wei, D. T. Attwood, T. K. Gustafson and E. H. Anderson, "Patterning a 50-nm period grating using soft x-ray spatial frequency multiplication", Journal of Vacuum Science and Technology 12 (6), 3648-3652, (1994).

80. H. Ade, B. Hsiao, G. Mitchell, E. Rightor, A. P. Smith and R. Cieslinski, "Chemical and orientational imaging of polymeric samples", in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 68-69, (1994).

81. C. J. Buckley, S. Downes, N. Khaleque, S. J. Bellamy and X. Zhang, "Mapping the density and mineral phase of calcium in bone at the interface with biomaterials using scanning x-ray microscopy", in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 44-45, (1994).

82. W. S. Haddad, I. McNulty, J. E. Trebes, E. H. Anderson, L. Yang and J. M. Brase, "Demonstration of ultra-high-resolution soft x-ray tomography using a scanning transmission x-ray microscope", in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 312-313, (1994).

83. M.M. Moronne, C. Larabell, P.R. Selvin and A. Irtel von Brenndorff, "Development of fluorescent probes for x-ray microscopy", in G. W. Bailey and A. J. Garratt-Reed (eds.), Proceedings of the 52nd Annual Meeting of the Microscopy Society of America, San Francisco Press, San Francisco, 48-49, (1994).

84. C. J. Buckley, S. J. Bellamy, N. Khaleque, S. Downes and X. Zhang, "Possibilities for Chemical State Imaging of Calcium Compounds", in V. V. Aristov and A. I. Erko (eds.), X-ray Microscopy IV, Bogorodskii Pechatnik, Proceedings of the 4th International Conference, Chernogolovka, Russia, September 20-24, 1993, Chernogolovka, Russia, 207-212, (1994).

85. K. K. Goncz, R. Behrsing and S. S. Rothman, "A study of the properties of zymogen granules using x-ray microscopy", in V. V. Aristov and A. I. Erko (eds.), X-ray Microscopy IV, Bogorodskii Pechatnik, Proceedings of the 4th International Conference, Chernogolovka, Russia, September 20-24, 1993, Chernogolovka, Russia, 256-264, (1994).

86. G. R. Morrison, "X-ray imaging with a configured detector", in V. V. Aristov and A. I. Erko (eds.), X-ray Microscopy IV, Bogorodskii Pechatnik, Proceedings of the 4th International Conference, Chernogolovka, Russia, September 20-24, 1993, Chernogolovka, Russia, 478-486, (1994).

87. A. Irtel von Brenndorff, M. M. Moronne, C. Larabell, P. Selvin and W. Meyer-Ilse, "Soft X-ray Stimulated High Resolution Luminescence Microscopy", in V. V. Aristov and A. I. Erko (eds.), X-ray Microscopy IV, Bogorodskii Pechatnik, Proceedings of the 4th International Conference, Chernogolovka, Russia, September 20-24, 1993, Chernogolovka, Russia, 337-343, (1994), Also available as Lawrence Berkeley Laboratory report LBL-35197.



1993

88. H. Ade and B. Hsiao, "X-ray linear dichroism microscopy", Science 262, 1427-1429, (1993).

89. P. M. Bennett, G. F. Foster, C. J. Buckley and R. E. Burge, "The effect of soft X-radiation on myofibrils", Journal of Microscopy 172, 109-119, (1993).



1992

90. C. J. Buckley, "Imaging of Calcium Deposits in Cartilage by Scanning X-Ray Microscopy", Bone 13, 100, (1992).

91. C. J. Buckley, S. Y. Ali, C. A. Scotchford, M. Rivers, K. L. D'Amico, J. H. Dunsmuir and S. R. Ferguson, "Imaging of Calcium Deposits in Human Cartilage", Scanning 14, 27-28, (1992).

92. R. E. Burge, C. J. Buckley, G. F. Foster, A. Miller and T. Wess, "X-Ray Microscopy at Suboptical Resolution: Direct Observation of the 65-nm Periodicity in Collagen Fibrils", Journal of X-ray Science and Technology 3, 311-314, (1992).

93. K. K. Goncz and S. S. Rothman, "Protein flux across the membrane of single secretion granules", Biochimica et Biophysica Acta 1109, 7-16, (1992).

94. C. J. Buckley, R. E. Burge, G. F. Foster, M. R., S. Y. Ali and C. A. Scotchford, "X-ray Probe Mapping of Calcium Deposits in Articular Cartilage", in P. B. Kenway, P. J. Duke, G. W. Lorimer, T. Mulvey, I. W. Drummond, G. Love, A. G. Michette and M. Stedman (eds.), X-Ray Optics and Microanalysis 1992, IOP Publishing, Bristol, 621-626, (1992).

95. C. J. Buckley, R. E. Burge, G. F. Foster, S. Y. Ali, C. A. Scotchford, J. H. Dunsmuir, S. R. Ferguson and M. L. Rivers, "X-ray imaging of calcium deposits in human cartilage", in C. Jacobsen and J. Trebes (eds.), Soft X-ray Microscopy 1741, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 363-373, (1992).

96. J. R. Gilbert and J. Pine, "Imaging and etching: soft x-ray microscopy on whole wet cells", in C. Jacobsen and J. Trebes (eds.), Soft X-ray Microscopy 1741, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 402-408, (1992).

97. K. K. Goncz, M. Moronne, W. Lin and S. Rothman, "Measuring changes in the mass of single subcellular organelles using x-ray microscopy", in C. Jacobsen and J. Trebes (eds.), Soft X-ray Microscopy 1741, Society of Photo-Optical Instrumentation Engineers (SPIE), Bellingham, Washington, 342-350, (1992).